RNA id: TU65687


Basic Information

Item Value
RNA id TU65687
length 2350
RNA type TUCP
GC content 0.39
exon number 2
gene id G49209
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12452535 ~ 12458439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATAATAAGAATACAGCAGAATTCTGGAGAgtcttatatttttttttctctgacttATCATTATCATAAATACTAATATGAATACATCATACACAATAAACACAGCACTATCCAAGGGCGTAGAGAGAGTATCACAAGACATCATTCACCACTAACGACAGAGTATATTTCATTTCAGCATATTTATAAGAGCtacagtgaaagagagagaaagacagagagagagagaagaaaaaacatgTGGGGAGGActagaggaagagagaaagccAGGTGCTTCTACACCGCCTGAATCAAATAAACctgataaaaaaatttaaaaaaagagtgaaTCCAAGGCTGTGCAATGGATCGATATATACGGGAGATGGACAACAATTCATCCCGATGAGGACTGTGGAAGCAAAACTACCAATCAAGACACATCTCTAACCATTTGGCAAACACGATCTTGTATATCCAAACAGAGGATTGGCAGTAGGATAGGTATTTATATCTGGATAAAGTAACTATTGCAGCACTTAACTTTGGGCTTTGAGTAGAATATAGCAGAGCTGCTGTATGTGCTGTGCCGTAAACACTATGATGGATCAAACATAGCACAGTATTACTGTGTAGTCTAACCTTCCTGCAGCTTTAAGCCTCAGCCTCTCAAATATGTGTAGGGATGCTTTAGGTTATAAGGATGCGTGCAGTAAATTCACCTTTAGAAACAGAAGGGATAAAGAAGGAAATTGAGGATGCAGGAGAAGTATATATGGAGACATATTGTTCAGATCgcctcataataataatatgtgtttAGTCCTTTAATATACTTTATTCTCATTTGCCTACAGTTAATGTTAACGTGAGTATGTACGTCACTGATTACAGTGTGATAGAATAGAAACACCAGTTAAAAAACTATATGACTCTGTCTTACAACTTTCCGGACCACATAACAGGTGATCAAAACAGGACGAGGATTCATTGACAACATTAGTTTGATCCCATTACATAAATccaaacaataaacaaacacacacgtcgCTAAATCTGTTGTTCACTGCCCCGATTCACAATTTTCATACTGATAGCACACTACAGCGGTTTCTGAAACAGCACAGCAAATATGAGATGCTACCATGCTCACTAATTTTCTTAACCTGATGCAATTTTTGATCTTATACGTCAGGATTTAAAATGTTGTGTGTATCAGAAGAGTTCATCCTCGCTTGATAGTGATATTTgatggaaaaatatatataaaaacataacgtTGAAACAAAATACTAAAAACCTGCTAACCACATATTCACTGTTATTACTATAAATGACTCTGCTCACTTTATATATTGataattctgtttttctttcaacatttgCCATCATATTTTTAGCAGCCCCCCCTTTTATAAAtctcaaatttaaaaaagtaaaaaaaaattttttatagaCTCTGAgatgaataaatgaaaacattatgGTATATGAATAATTTAAGGGGATTGAAGGGCAAAGGCTAAACTATGTGAGCTCCTAAACAGAACCAAAGTAAATGCAATTGAATAACTCTGTGCTCAACATTTGTTGTATAACAACTTTTATGGAGTGCACAATTATTCAACTGTGTACATATAATCATATATATCAGCATGTTGATATTTACACAGCACAGACAAATACATTCTCCCAAGTTAAATATTActacaattgttttttttctccataaatGTAAGTCTTTTCCATTACAAGATTTCTCTTAAATGTTCGTCAACGAATGTTTTGGTATTTGTATTCAAGTTTTTCTCGTATAACCAAACAGACAATCCTCTGTTGTCTTCTACAGTTAAATACATCACGAGAATAAACATCATGTTACAGCAAAGACCCATTTCCCCTGTGGTGTCCCCCTCCCCATGACCCCACCAGTTCCTGCCCTCCATGGCTCCCTCCCTCCGCCTGTCAActcacagatacacaaacagacaaacagaggagTGTGGAAATGCAGGCAGTGGTCGAGAGCCACACTCCAAAATCACAATGTCACCCATCCTGCAGCTGTGGTTTGACTGGACAGGCTCACATTTGATTAGAGTAGGAGGTGGGCTGCTGCTCATAGCCCTGACTGTATCCTCCTTCCTCAGTGTAGCCTCCCTGCTGGCCGTATTCAGGCTGGTACCCTCCCTGGGAGCCGGCGTAGGGGTCCTGCTGGGCATAGCCTCCCTGGTCAAAGGATTCAGGGGCGGGCTGCTTTTCTTGTGATGGGACGTATGTTCCAGAGAAGGCAGCCATCCAGCCGGTCTCCTTGAACACAAACCACAGGTTTCCTATCCACAGGATCAGGTTGATGAAACCAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65626 lncRNA upstream 88094 12364093 ~ 12364441 (+) True G49157
TU65598 lncRNA upstream 149132 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65594 lncRNA upstream 198740 12252443 ~ 12253795 (+) False LOC120559657
TU65564 lncRNA upstream 229481 12220013 ~ 12223054 (+) True G49106
TU65559 lncRNA upstream 240020 12211744 ~ 12212515 (+) True G49105
TU65700 lncRNA downstream 12011 12470450 ~ 12472272 (+) True G49221
TU65703 lncRNA downstream 15648 12474087 ~ 12476025 (+) True G49223
TU65712 lncRNA downstream 51603 12510042 ~ 12511578 (+) True G49230
TU65749 lncRNA downstream 201988 12660427 ~ 12661371 (+) True G49241
TU65816 lncRNA downstream 215903 12674342 ~ 12677678 (+) True G49301
XM_039799408.1 mRNA upstream 66262 12381032 ~ 12386273 (+) False LOC120558417
XM_039799409.1 mRNA upstream 66262 12381035 ~ 12386273 (+) True LOC120558417
XM_039799411.1 mRNA upstream 72838 12368796 ~ 12379697 (+) False rad21l1
XM_039799410.1 mRNA upstream 72838 12369207 ~ 12379697 (+) True rad21l1
XM_039799412.1 mRNA upstream 72838 12369207 ~ 12379697 (+) False rad21l1
XM_039800031.1 mRNA downstream 40930 12499369 ~ 12504342 (+) False pqbp1
XM_039800030.1 mRNA downstream 40938 12499377 ~ 12504342 (+) False pqbp1
XM_039800033.1 mRNA downstream 41174 12499613 ~ 12504342 (+) True pqbp1
XM_039800024.1 mRNA downstream 54815 12513254 ~ 12556372 (+) True LOC120558783
XM_039800026.1 mRNA downstream 54815 12513254 ~ 12554952 (+) False LOC120558783
unassigned_transcript_224 other upstream 228897 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 242126 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 355698 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 1136543 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 1278881 11172595 ~ 11173654 (+) True G48752
XR_005639089.1 other downstream 194171 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 402282 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 1073951 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1654611 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1654829 14113268 ~ 14121022 (+) False hmga1a

Expression Profile