RNA id: XM_039800803.1


Basic Information

Item Value
RNA id XM_039800803.1
length 3229
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC120559236
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12794943 ~ 12844434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacatgctcagtcaGCGCAAGTGACACAAGTGCTGGCTCCATTGAGTTGACTGACTCACTGCTATCCATTAGCCGGCATGCCgcagagaaagaggagtttCACTTTTGGAGCCTATGGAGGagtGGACAAGACCTTCTCCAAGGCCAGAAGCATATGGAAACAAGATGGGAGTGACCCTCGGATTTCTGCAACACTAGAGCCCCAGCTGTTCCAGCCTACACTCCCGTACACCACGTCACCATTCCACAAGACTCCAGATTTATTTGCAATGATTGAAAAGATACAGgGCAAAAGGATGGATGAGCAGAGGTGCACCTTTCCTCCCCCACTCAAGacagaggaggACTACATTCCATACCCAAGTGTCCATGAGGTGTTGGGCAGAAAAAGCCCCTTTCCTCTCATCCTCCTCCCGCAGTTTGGGGGTTACTGGATCGAGGGGACTAACCATGAGATGAGTGACACAGTGGAAACAGAACAGCCGCAGCCTCAGTCTCCGAACAACCGCACCAAGCTGGAATGTAACACAACAGCTACGATCTTCCGGAAACACTTCCTGGGAAAGGAACATTTTAATTACTATTCAGTGGACAGCGCCCTTGGACATCTGGTGTTCTCTCTAAAGTACGATGTGATTGGTGACCAGGAACATCTCCGTCTGATGCTCAGGACCAAGCTGAAAACCTACCATGATGTGATCCCCATTTCCTGTCTGACAGAGTTTCCCAATGTGGTCCAAATGGCCAAGCTGGTCTGTGAAGAGGTCAATGTGGACCGCTTTTTTCCTGTCCTTTATCCAAAAgcttCAAGACTTATTGTCACTTTCGATGAACATGTGATAAGCAACAATTTCAAGTTTGGGGTCATTTATCAAAAGTTTGGACAGACTTCAGAGGAAGAGCTCTTTGGCAACAGTGAAGAGAGTCCTGCCTTTGTAGAATTCCTGGAGTTTCTAGGAGAGAAAATTGAGctgcacaactttaaaggTTTCCGCGGAGGGTTAGACGTGACTCACGGGCAGACTGGCGCTGAATCTGTCTACTGCAACTACCGTAACAAAGAGGTCATGTTCCACGTGTCCACAAAGCTGCCTTACACAGATGGGGACACCCAGCAGTTGCAGAGAAAGAGGCACATAGGGAACGACATTGTGGCCATCTTATTCCAAGAGGAAAACACTCCCTTTGTACCGGACATGATCGCCTCCAACTTTCTCCACGCCTACATTGTGGTCCAAGTGGTCAACCCCTGCTCTGACAATGTTCTCTACAAGGTGTCGGTGACAGCACGGGATGATGTACCTTTCTTTGGCCCGGCCCTCCCAAACCCTGCTGTCTTTAAAAAAAGCCCTGAATTTCATGAATTCCTATTTACGAAGCTCATCAATGCAGAGTATGCCTGCTGCAAAGCAGAGAAATTTTCCAAATTAGAGgaacGAACGAGGTCGGCCTTGTTAGAGACCCTTTATGAGGAGCTCCATGTGAACAGTCAGGCCATGATGGGTGTCGGAGGAGACGACGACAAGCTGGAAAATGGGAGTGCAGGAGGAGGGGGCTTCTTTGAGTCCTTCAAGCGGGTGATCCGCAGCAGGAGCCAGTCTATGGATGCCACGGGTCTTACTTTCAAGAAGCCGCACACATTCTCCACTAGCTTCAACAGCAGCTTTAACCACGAGCCCGCAGAGAGCCCCAAATTCCCAGGGATATCTTTGATTGTCCCAGGGAAAAGCCCAACCAGGAAAAAGTCTGGTCCTTTCAGCTCCAGGCGAAGCAGTGCCATCGGTATTGAAAACATCCAAGAAGTCCATGAGAAGAGTCGAGAGAGCTCCCCAAATACACAGAAGACCCCTGACAGCGGTCACGTCTCTCAAGACCCCAAATCTGACAACTCGTCCAATCAGAGCTCCCCCGAGGTGCTTACAACCACCAAGAACAATTCTTATCTCGGTGGCAGGGCCCCATCCATCCCCGAGGGTCATGACCTCTCCCGCTCCTCCTCCAACGCTAGTAGCTTCGCCAGTGTGGTGGAGGAGAACGAGACAGAGGCCACAGAGGACTATGACACAGGCATGGAGAGTCTGTCGTCTGCCGGGACGCCACACAAGCGAGACTCCTTCATCTACAACACCTGGCTAGAGGACAACATCAGCAGCACCTGTACCAGCGGTCATGGTAGCTCCCCAGGTGAGACAGGGCCTGGGAAACCTGAACGAGGGAAGGGGACGGATGTCCGTATAAAATTGGAACGACCACACGACCATCAGTCCTCATCGAACTGTTAACTCCACCCATCTGGTTGTATCCTGGATCTCCATCTTCAGCATTCCCATAAGTCACAATCCCACTGGGAGGTGAGACAAGTGCAGGCGTTCGCCATGACCAATGATGATGAGGACGAAgatgaggaagatgaggaagatgaggaagaATAGACAAAGCAGGTGGAGCTTGGCCAGTCTGCTGCTGAGTGAGGGCCAGAGTGCAGCATATCCAGAAACCTGGAGGACACTGGGGAGGATGACGCACAAGGAGGGGCCAGCTTTTGCACAGTGTTGTTGCCTTCCACTCTTTTCTTTGCCTGTTCTGTTGCCTACATGTAGTTGTATGTTTTTCTTTCCCACACCTTTTGTTTCAAAAGTGCACATTTTCTATCTACAAATTCCATGGTTTTATTTGTAAAAGATATCACTGTGGTTTAGTTTGTCTTGTTGAAGCCCAGGTTTGCTGGCCATACAGGGTAAAGACAGTGCCATTGAGCTCTCTATAGAGATTCTGAGAAGGACTTCCGCTGAAACATAGAGAAGATAATTGCCTGGATGGTTTCACCAAATCAACAAAGGTTTCGGCTCAATAAAGATCTCTAATGTatacataatataaaatattcaaCATCAAAGTTGGGTATATTCTAACAGAACATCTAATGGGATATAGAATTCTTCTTTTGCATGCTGTTGACTGTGATTATTTTCTGGGTAAAATAGGAAAAATAGGACTGTATAACTGCAGCAAAACAATTGTACTCTTTCCTTTATGACCCAAATCTCAACAAGATTAAATTTCAAACTTGACACTACAGGTCAAAGTGAAGAGAGCAATGTATCATAGATAACATGGCCTTATAACTTAAACGTCCCTCATTTTACCTCACTTGTTTGACTGTGTGTTCTGCAGCCAATAATGGGATTGCACTATGAGATTAACTGtaaaactaatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65847 lncRNA upstream 11162 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 62533 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 117272 12674342 ~ 12677678 (+) True G49301
TU65749 lncRNA upstream 133579 12660427 ~ 12661371 (+) True G49241
TU65712 lncRNA upstream 283372 12510042 ~ 12511578 (+) True G49230
TU65874 lncRNA downstream 77610 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 84861 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 463445 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 522336 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 522336 13365731 ~ 13378409 (+) True G49474
XM_039801206.1 mRNA upstream 15709 12768809 ~ 12779241 (+) True nt5dc2
XM_039801815.1 mRNA upstream 28910 12744560 ~ 12766040 (+) True zgc:162200
XM_039801816.1 mRNA upstream 28910 12744773 ~ 12766040 (+) False zgc:162200
XM_039801817.1 mRNA upstream 72354 12708643 ~ 12722596 (+) True LOC120559796
XM_039799295.1 mRNA downstream 2223 12845618 ~ 12847975 (+) True aurkaip1
XM_039800616.1 mRNA downstream 5417 12848812 ~ 12859392 (+) True LOC120559133
XM_039800623.1 mRNA downstream 17326 12860721 ~ 12884287 (+) False LOC120559134
XM_039800622.1 mRNA downstream 17326 12860721 ~ 12883086 (+) False LOC120559134
XM_039800617.1 mRNA downstream 17329 12860724 ~ 12886224 (+) True LOC120559134
XR_005639089.1 other upstream 136642 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 336511 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 571312 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 584541 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 698113 12092779 ~ 12096837 (+) False LOC120559364
XR_005639216.1 other downstream 17326 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 688995 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1269655 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1269873 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1269873 14113268 ~ 14121022 (+) True hmga1a

Expression Profile