RNA id: TU66161


Basic Information

Item Value
RNA id TU66161
length 2533
RNA type TUCP
GC content 0.46
exon number 1
gene id G49538
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13532390 ~ 13534922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCACGTGGAAAAAATGCTCTTCTTTATCGAGAGCTTTAACAccatcaacagtaacgttaagaAACCTAACTTGTCAAATGTTATAAGTACTTCTAAACACAGGATCCCATCTTGATAAATCTCACAGTAATAATTCTTGGATACTCACAGCTTTGAGATAGGCCACGTTGCTCTTTTTGATTGCATCTAGGAGCTGGTCGCGGGGTGTGACATCAACCTTAGGGGGCAGTCGTCTGCGAGGGATGGGCTTCAAAGTCTTAATCACGTCAGTCAGGTTTTCTCTTTCATCTGCCACCTCTCCACTGCCTGCATCCTTCTCTTTGGGAGTCTTCCTCAGTTTGAAACTTGCATTCTCTGGTCTCCTGTTATCCCTCGGGTCCAGGTCCAGAAAAGGGTCACGTTTCTTGGGAGTCCTCTTCAACTGGACGTCCCTCAATGCGTTTGCTGGTTCGGCACTGGGTTGTTTGGGAGTGCTCTTGTGTTTGAGTTCCTTCTGAGGCTCCGGCTGTCCCGTCTGGTGGTGGGTTTGAGGTACAGTGCTCAGTTCAAACGAGGGTGGGACAAGCCCATGCTCCTGCAGGACTTCTAGAGGCGGTATGTAGCCGAGCATCTCAAGTAAACCAGGCGGTAGGTTAAGGCTGTTCTCATACATCTGCATCAGCTCCCTCTGCTCCTTcacttgctgctgcttttgctCCTCCTTCCTCAGCTGCCTCTGGCGGTCCAGATTCCTGGTTAGAAGGTTGGTCACCACCATCCTGGGCCCCGGCTGCTCAAAGTGGTAGCCCATCTTCAGGAGGGTGTTGTTGGCCTTGAGCAGGCGTGAGATCTCCATCTCTGCGTGGTGACCCAACATGTGCCTCTGGTTGTGAAAACGCAGCTCTGTGAGAGTCTCGTTGAATTGGAGGCAGCGGATGATGGCGACGATGCCCTTCCCGGTCACAAAGTTGGACTCAATATTCAAAGTGGTGATGCCGCGATTCTCTCGTAACATGTTGGCCAGGTTGAAAGCTATGTTTTCATCAACACCAGTGTTGGCAATACTGAAGGTTTTCACATGTTTGTTCTTCTTCAAAGCGTTGACATAATCCAAGAGCATCTCTTTGGGAATGTTTTCTATGTTGTTGAGGTTTACCTCAGTGATAGACGGGTTGTTGTTGCGGATTTTGTCGAGCGTCGACTCCAAGTTTGTCTCATTTCCTGAGGGTcttgatgtcatttttatatTGTTGAATGCCAGCTTTGGAAGTTGTAATTTGTtaatttttctctcttctttcggCAGGGGCTCATCATTGGTTTTGCTTATTTTGGGCTCCTCTGGAGCCTCTTTGGGAAGCGAAGAGTCTGTAGTTCTCTCTTCTTTCGGCAGTGGCTCATCATTGGTTTTGCTTATTTTGGGCTCCTCTGGAGCCTCTTTGGGAAGCAAAGAGTCTGTAGTTTgaatttcctctttctcttcaacTTGTGATGTGCCGTGTTTTGGGGCTATGCTCTCACTCTTCTCCTTTGTGTCTGGAAAAGGCTGATTGTCATCTGCAttgttttttgacactttttctctGTTAGCGTGTAGAGGATCTACATGTTTGTCTATATTTTCACGTTTGCCATTGTTCACAAGTGACTTCACctcttcctcatcttcctcatcCACCCCTTTGTCCTTTTCATCGTTTTCATCCCTCTCGTCAAGCTCTTCAACAATTTCCTCAATGATCTCTATAATTTCCTCTCCATCTGTATCATCTACAGCTTCTTCCTCAATGACTTCCTCTATTACTTCATATTCCACATCTTCTTCCTCGTCTTTCTTTTCAGTTTCCTCCCTCAAAGCTTTCTgatgaaaacaacatcagaccAAGGTTTGTTATtccaaaaactttttttttttaaattctgccTGTAACATTTAAATCTAAATTGATCTGTACCTAAACATTCAAGGGTTTGACTTCTTACCTCACTGGGCAGCAGAATAGCAGGCACTCTTTCTTCCTCAAGCATACGGTTGGACTCTTTCTCCCAGTAGAGGTAACCAACCAGGGATCTGTGGTCGAACGTCCCTGTTGGAGGCTTCTCCGTCTGGTCCTTTTGCCTCTGCCCCACCGGTACCCTCTCATCTGGGGCAATAATAACATCCATCTCACTCTGGAGCTCCTTAAGCTCCTCGGGTGAAAGCATTGCAAGGAGTTCATCCTCGTCCATATCCTCTTCATTGAGATCCTCAAAGTCTTTCCTACTGTTTGACATATTTGCGTAAACTTCTTTCTTCCGCTGATATCAAAAGGAAGGACAACTTCTGTCCAATCTATGACTCAGGACAGAGCAAACTGAGAAGCCTCTGACTTTGACTTCAGCTAGGAACCATTTGCTCCTACCGCATGTGGAGTCTAAAATTAAATCCTGTGAACTGCATGGAAGATATTTAAGGTACAAGCAGGGAGCCATGCTAAAATTCTTCTTTCAGCCCCTGCTCCCAGCTGGCCTGGCCATCAGGATCTTTTGGGATGACAGTTGCTTCAGGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66127 lncRNA upstream 85655 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 99173 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 153981 13365731 ~ 13378409 (+) True G49474
TU66077 lncRNA upstream 164071 13365731 ~ 13368319 (+) False G49474
TU66038 lncRNA upstream 224818 13306840 ~ 13307572 (+) True G49461
TU66203 lncRNA downstream 81955 13616877 ~ 13641874 (+) True G49562
TU66214 lncRNA downstream 101944 13636866 ~ 13639093 (+) True G49572
TU66235 lncRNA downstream 128965 13663887 ~ 13724990 (+) False LOC120558697
TU66236 lncRNA downstream 190166 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 190166 13725088 ~ 13732249 (+) False G49585
XM_039800757.1 mRNA upstream 902 13527308 ~ 13531488 (+) True LOC120559207
XM_039799318.1 mRNA upstream 32948 13474266 ~ 13499442 (+) True LOC120558357
XM_039799317.1 mRNA upstream 32948 13474266 ~ 13499442 (+) False LOC120558357
XM_039800980.1 mRNA upstream 80483 13448308 ~ 13451907 (+) True slc16a7
XM_039801794.1 mRNA upstream 240078 13284381 ~ 13292312 (+) True pm20d1.2
XM_039801319.1 mRNA downstream 29703 13564625 ~ 13605435 (+) False LOC120559547
XM_039801315.1 mRNA downstream 30643 13565565 ~ 13605435 (+) True LOC120559547
XM_039801316.1 mRNA downstream 30644 13565566 ~ 13605435 (+) False LOC120559547
XM_039801318.1 mRNA downstream 44766 13579688 ~ 13605435 (+) False LOC120559547
XM_039801317.1 mRNA downstream 48568 13583490 ~ 13605435 (+) False LOC120559547
XR_005639216.1 other upstream 648103 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 874082 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1073951 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1308752 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 1321981 12182209 ~ 12210409 (+) False nol4la
TU66274 other downstream 578128 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 578346 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 578346 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1029945 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 1039620 14574542 ~ 14577572 (+) True G49776

Expression Profile