RNA id: TU66214


Basic Information

Item Value
RNA id TU66214
length 2145
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G49572
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13636866 ~ 13639093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaatgtggcaaaaggtcgaaaagttcaagggggccgaatactttcgcaaggcactgtattatAGTAGTTCTCAAAAAAATCTGCTCTGATCTATGCAGCCCAGAATAGTCAATCTAACTCCCTCTCATACActttgtcacacacaaacacaggggaAAGGTGCCTTCGGTGAGATGTATATATGGTTCAGCttcctaattttttttcattttatttcaataataCAAATGCAGCCTTTTACATTACCACAGAAAAGAAATCCTAAAAACTATGGATTTGAGAGACACTGAACTTTGTTTTGGTGCAGTAGTAAACCATCTCTTAATAACTTACAGATTTGACCCTGCTGCAGGGGTTGCATCACTTCACCAAACACCCCCGATTTGTGCAAATACACTAAAATAGGCCCTGAGCAGTCGCTCAAGGAGATCTAAGTGAGACTTAGATCTACATCTTCTGGTGTCATGTGTTGTGTTTATCATTTATCCTGGGGCCAATAGTATCTACAAAGAGTAGGCTTCACAAATTCCATTTTACACTGGTCATATGAAACACAATTTCAACGTTATCATCTACACATCTCAAGTTACtattaaaagtagaaaaataacaaaaacccaaatcagaaaaggttacacaaAACCAAGGTAGATTTGGTCTCagttatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagtgcttGATTTGGGACGGATGCTTAAACAAAATGACAACCACAACACTGCAAATTTGCTTCAAATTCTACAGAATAGAAATGATTGCATATATTTCTCAGCATCTACTCATGATGATTTGTGCGCTGAGGTCATTTTATTGTAACAAGAACATATTTCCTTTTACAATCCGCTGATatcctaaaaaagaaaagaaaaaacgaaTGTGCAATTTTCTGCTCTAAAGATTTATGTTAGGCAACAGTATTTGGCTGTAACATACAAAACGGAGAAAAGAGCTCCCTAGAAAAGCCTTGCAATGCATTGTTAAGATAAAGGTTTGCTTTGTGAAACTAGGGCTCCTCTTAGATCTAAAAATGAGATTTAATTCAAAGACCTAGCTGTGTCTGTGCTCAGCAAACTGCACACAATATGCTATAATACATCTAAATAAACCTGACATTTACATGTACATGATCGGCTGTTTTGGTTAGGGAATTGCAAAATGTGGaagtataaaaacacacaaacactgccaCAGATAAAATcaaactgacatttttttttgttttcgactaaaataaaaaaaagtattttggatATTATTATGAATGTGCTCAGAAGATGGGAAATTCCATTGATTGAGAATCATAATACATGGGCTACATTTAATGTACTGTAATTAAAGCCGGTGTAGGCAGTTTTCTGAAAAAGGCAACAACAACCAAAACAGCCCTCCTTCTGcagctctctccctctctatcctaagcccctcccaccagACGAGCACCGGCATATCATCTCCATTGTGATTGTGATCCCGATGCCGTTGTACAGCTGTTAGCAGAAGGCTAAACTATTATCAacattttctctccatctctgaaaCGCTTCGCCGATATTGACGCGTGTTTTATTGCCTTTATTGCCTGTCTTCCATTTTTTTGCGTTGCTTTGCACCATTGGCAGTTTCTGCCAGTGCTGTAACAGCAACTTTTTCTGCAGGATTATCCAGCATTGAATCAGGCCTTCACCATCTGAAGGAACGTACACACGCATCTACTTTTATAAACCAGCCAATAGGAATGCTCTTtatctgaaatgacctgtgattggccaaattCTCCCATCACGGGCAAGATTTTCTAAAACCCGaaaaacagagccaagaggaggtgcagaagtctggttttctctcagaccacttgaattacaatatgctgaaaggttATTACTTTGTATTTAACGACACCAAAACAAATGCCTACCCTAGCTTTAAGATAATACATTAAGCAACTATGAACTCAGTTGCTTCAAAATGTGCCCAAATATTATCCAAAACATGTTCACAAGTAAAAAACATGTATATCTCTAGACTGCTGATGTGCAATATGTGCTAATTTCTTCGACCTCCTTCAAAAGCGTGGTGCTCCTCATG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66127 lncRNA upstream 190131 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 203649 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 258457 13365731 ~ 13378409 (+) True G49474
TU66077 lncRNA upstream 268547 13365731 ~ 13368319 (+) False G49474
TU66038 lncRNA upstream 329294 13306840 ~ 13307572 (+) True G49461
TU66235 lncRNA downstream 24794 13663887 ~ 13724990 (+) False LOC120558697
TU66236 lncRNA downstream 85995 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 85995 13725088 ~ 13732249 (+) False G49585
TU66244 lncRNA downstream 110465 13749558 ~ 13750842 (+) True G49591
TU66249 lncRNA downstream 119494 13758587 ~ 13992115 (+) True LOC120558703
XM_039801315.1 mRNA upstream 31431 13565565 ~ 13605435 (+) True LOC120559547
XM_039800919.1 mRNA downstream 3536 13642629 ~ 13649896 (+) True LOC120559296
XM_039800920.1 mRNA downstream 3536 13642629 ~ 13649896 (+) False LOC120559296
XM_039801872.1 mRNA downstream 13275 13652368 ~ 13654660 (+) True guca1b
XM_039801870.1 mRNA downstream 16460 13655553 ~ 13657376 (+) False oard1
XM_039801871.1 mRNA downstream 16620 13655713 ~ 13657376 (+) True oard1
TU66161 other upstream 101944 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 752579 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 978558 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1178427 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1413228 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66274 other downstream 473957 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 474175 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 474175 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 925774 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 935449 14574542 ~ 14577572 (+) True G49776

Expression Profile