RNA id: XM_039799843.1


Basic Information

Item Value
RNA id XM_039799843.1
length 7471
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC120558697
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13658732 ~ 13724990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaagaaaaaaaaaaactgcagtgtgTGTAGTTTGTATCCCTCCCCTGAGCAGATCTTTATCAATTTGTGTACTCCAGTCTTGGGGTgcatttgaatgtgtgtgtgtgtgtgtgtatatgtggcaGAGTTTACAGGAGGACAGAGTAAAGTGTCTCGGCGCCTGTGGAGAAGGGGAAGAGCTTGGTGTCCTGAGGAGAGCAACCTGCACAAAAGGGACTGTGTGTGCAGCCTAAATGACGAAGTGGAACTTGTTCAGGGATCAGACAACGCCCATGGTCGCTGCTAACCCAACGGGGGCTAGTGCCTTGACTGTGACTCCAGCCCCTGTCGCATTAGTCTCTACTGACAACTCCACCGAACCGGTCAACAAGAACGATGCCTTTGACGAGatcaaaaacaagttcctaAATGAAATCGACAAGATTCCACTGCCGTCCTGGGCCATCATTGCCATTGCCGTGGTCGCTGCTTTACTCATTCTAACGTGCTGCTTCTGCATCATCAAGAAATGCTGttgcaagaagaagaagaacaagaagggCAAGAAGGGGAAGGGTGACATGGGAATGAAGAACCTGAAAGGGGGAGAGAAACAACAGGATGATGACGATGAAGAAGATGACGTCGAACCTGGACTGACTGGAGACGAGAAGGAGGAAGAAgtgaaggagaaagaaaagcTCGGGAAGTTGCAGTACTCCATTGATTATGACTTCCAGGAGAACAAGCTGACTGTGGGAATCCTGCAAGCAGCTGATCTCCTCTCCATGGACAGCGGTGGCACCTCTGACCCTTACGTCAAAGTCTTCGTCCTCCCtgacaagaagaagaagtacGACACAAAGGTTCACAAGAAAACGCTCAATCCTGTCTTCAACGAGACCTTCACGTTCAAGATTCCATTCCAAGAGATGGGAGGGAAGTCTCTGGTAATGTCAGTCTATGACTTTGATCGCTTCTCTAAACATGATGTCATTGGAGAGATTAAAATACCCATGAACACCCTTGACCTGGCAAAGCCAATTGAAGAGTGGAGAGACCTGGACAGCGCAGATCAGGAAGAGCCGGAGAAGCTGGGTGACATTTGCATCTCTCTGCGTTACGTCCCCACTGCTGGCAAACTTACCATCTGTATTCTGGAGGCCAAGAACCTGAAGAAAATGGACGTGGGTGGACTGTCAGATCCATATGTGAAAATTAACCTGCTGCAGAATGGAAAGaggctgaagaagaagaagacgacagTGAAGAAGAACACTTTGAATCCGTACTACAATGAGTCCTTCAGCTTTGAGATTCCTCTCGAGCAAATGCAGAAAATCGTAGCTGTGATCACAGTGCTGGATTATGACAAGATTGGCAAGAACGATGCCATTGGGAAGATCTTGGTGGGAAGCAAGTCCACGGGGGCCGGGCTGAAACACTGGTCCGACATGCTGGCCAACCCCCGCCGCCCTATCGCCCAGTGGCATCCACTGCAGCCAGAAGAGGAGGTGGATGCCGCCCTCGCAGCCCTGAATGCCAAGAAGTAAACACATCGTCACCCACCTCCACCATACCTACCCATGCATTACCCATCCTTTCCCCCCAGGTCCCACATATCAGTGTATATTCCAGAAGAACACCCCAACTGTACATCTGCTccctttcaaaaaaaaacaaaaaacaccccaccccctcctcctcctctcccgcTGCCACCTTTCAAAAGATCCATAGATACCATTCAACATGATGGGAAATATAGTTGAAAAGCAAGCATCATGTTATATGAAAATCATGTCATTGAAAAAAGAAGACACGTTACTGGATGGACAGATACTCCGTTGATTTCCTTTAGATCTATTTTTGTATTGGGGTTGTGGTTCCATTAATAAGAATACACAGTAGACTGCGAAGAACAGTAAGAGTGCTATTTGGGAATCTGGTGATAGAGGGGATAAAACATATATTCTCTCATATTGTACTTCTCACCCCTTCCCTTTAGTGACACAGTTTGCTTAGAATAgtgcttaataataaaatgcTTTATACTGCCATATGATAGAGAAATAACACAAGCAGGTCCATTCCTTAGGTGTATTGTGCACCATGTTCCACACCTGCCAGTTATCATACCAGATGATTCTGTTAGTTTGATGTACATTCCTAGAGTTGGGTAGCAAGTAGGGATAGGCACATATCCAGTTGCCCACAAACGCACTGCCTTTTTTTTGATTAGTTAACCTTTCACCCATCGTCTCAGGAAAACTGAGAGGAAACTGAAACTCCATGCCTTTTTTTCTAAACGGGTTCTTATTATTCAATTGCTCCACTCGATGAGAATGAAATGTTGGATTCAGAAGCTTGAGCGCTTGTTTTTTTCGGTGACGTAAGGCTCGCGACTAGCGATAGTTTCGTTTATCCATGAAATGGTAAGTTAGGAaacagggagtggtggatttttagtaacaaaaaaaaaaaaaagggtatgtGTCTATTTTTGACTGTGCAAAAAGGGCCGTGTCTGTCATTTGAATAACAAAAGGCAAGAAAATATCAGAGTGGGTACAACAGAGACTGATTCCAACCACCAATGACATGATATTTACAAGGTGTCGATTACTGCCTGCAGTCCACCACCTCCCCTCCCAACGCCTCTGATTCTGTATCTCACTTGTTCAGTGCTACTGCCATTAGTCATGGACTTGACACAAGGGTTTTACTTCAAAGGAACCCCTATAACCGTCTTACAGTCATAAAGGAGACAAGCCTTCAAAGTAACAAAATAAGCAATTTTCAACTACCAGGGACGCCTTCCAGTTAGCGGTGTTGTTCTCttcatttctttattattatttttttctatctctTTTTACTTTGATTTATCcagttgtatttattttatttaacttaaaaTACTTTTATTCCTCAAGCACTTTAAATCCAAATGTTATGTTTAAGTACCCTCAGAAAACCAGAGCTTTAATGATTTACGCTAGTAATGACTGCTGGTTTTAAGACGGAAAAAAAGGTGCAAGGGAGTGCATTGTGTATGCAGTTTATTTGTCGTTGCTTTGTTTCCGCTCAGCTTTtcgtgtatgtgtttttattgtttgaatATTAGGTTTCTCACTTGATTGCAAGGATATGGTCTGGAAGAAGGCACTgatctgtgtgtattttatacACAGCTTACCAAACTGTTGAATTTAATTGCACTACTGGGTATTGTTCTGCTGTCTGGTGATTTGACACTGTTCTTTGAtctgtgtagttttttttttttttctttttatgataAAATGTTGTGAGATTGAATTTTTCTGTGGCACATGTGGCATGCCAGACAGGTCTGATTATATAAATGGACTCCtctaaaaagaaaagagacacaTTACAATCTAATGCTGCTCCCTGGCTCCTTCACAGAATGTAATTGGTTCAGTGTAGATTACTATTCTGTTCAAGAGGAATTTTGAGGACGAACTTTGACAAAATCCAAACCGTTGTCTGACCAACACTCCTCTGCCCTGAATAAATTGGTGAATGCTTAATTGTTAATTTAAATCCTGATATACATCAGGTATTTGGGCCCAGGTACACTTGCTTGCAGGTCTGGTTATTAGTTCAAATCAGTGCTGTCTGCACCAACAGCAAAAACTACCCGTTGactgtgtgcaaaaaaaaaataatatataaagtcAATGTAAATCAGATGTAGACAGTACCACAGCATTCTGGGAATTTGATTTAATGAATGCTCTTGTATCTTTCCCTGTTGGAAATgcgctttatttatttttttataaccatgttcagttttcagtttttcatCTCACATAATCTTTTTCCTCTGTTGATGAAGCAACGCTAAAGAAAAGGCAACATGGAAGCAATCAAGCAACCCATTGGTGTGTAGTTTTGCCTATATACATAGTTCACGTTGATACTGCATGTTTAtacaaaatactgtacataggAGCATGTTTTAGAGACAAAGCAAAAATATCTCGTGTACGTAAGTGGGTgtcatttgtcattttaataACACAAacgaagggggaaaaaaaagatgcactgtatattttctaaatgaaacaaatgtgtatttattttccaTGAGGGTCATTGGAGAGAATGTCATACAAATATTAGAGTACCATTACTAATAAGAACCTTTCCACGCCTGAAACTCTTAAGCAAGTGTGTCGTCCAGTACTGTGTGTGAGTTCATGTAGGATGAAAATGTATCCGCATGCTTGCTATATAATTCCTTGTGATCAAAATTTTGATTTGATATAATTTATCTGCCATACATTTTGTTTCAGCACTTATCTGAAGGCCAATGTTTGACACATTTCTGGATTTTATTGCTATTGCTATTGCTtattgcttcttctttttttctttttcctttttttttttaaacaaaacaaaatatgtttcaATTGTTTAATGTTTGGGATGGGGGGGGTCTCCAAGTCTATAAGATGAATATTTTCTAATAACAGATTTGGCACTGTGTTATTCTGAAATAACTCATTAGAGGAAGATCCAATCATTCTGCAAATCTGTAGGTGGATTGTAGGAGTTGTTATTTGTGCCAGTAGGGAAGTCTGTTGGATCACGTCTTTGTATGAAATGCATTTCCAGGAGCCAAAAGATGAATAATCCCATTCCAGTGTACACCAATGACTTGGAATcccttcttctctccttctttcttcttggaagtttttatttttcacttctACAGTACTTAAATGACCTGAAACCCTTCACGGCTGTGTCTCTTTTACTGTGTTTATTATACGATACGTGTATGTGTATACAAGATAAGTGAATAAGATAAAACTAAAGCCATAAAACTCAAGCACTAACTCTTTAGAGCTCAGCTGAGTAGAGTGtatttatgaagaaaaaaaaatccgacATGTCTTCATTTTCCTCGGCCAGTGTTTCTCTCTTTTACATTCCGTTCAGAGGTCTTTGTTCATCAGGAGggcaaaatccacttttctgtACATGTGAGCTTTGAGAACACTTGTGAGTTTAGTAGAGTGAGTGTGTCTTTTTCTACTTTCAGAGCTGTTGATGTCCTTGTTTCATAGAGGTAGCTGATTTTACAGTATTGTGATTAGTAATGTATATGCCTTGTTTTGATAGTATAAATAATACCGGTAGATATAATATCACAATAGGTTCTCCATAAAATTATATgctaaaattatatatatatatatatacatgagaGTGTGTTCTTGTCTTGGGCTGAGTGCAATTTATGAACCAAACTGGGTCACTTCTCCAGTTTCTCTTCTTCCGGTTTAGCAGCAGAATGTACTCATGACCACATGTACAATCAATAACACACTGCTGGTGATGTGCGGCTCATGCTGATggtttttgttggtttgtttagcATGTTGCTCGAGCAACAAAAGAATATAGTTAGAGATCTAACCATTTGAaagcaaaaagagagaaacttgTGTGTGGCATCCACGTTGTAGGCCTGAATCCCTCCCATAGAACTATGCATAGAGTTATGATTTTCACAATACACATGGCAGAAAGTATATGAATATAATATAGAAATACGTATGTCATGCACAATATGCGATAATGGGAGTAGTTTCCAAATGTGGCTTTCTTGCCAAGAATCTTATATCTGTGCTGGAGCCAGGagacggttagcttagcataaagactggaaacagggggataAGAGTGGCATcggtcttctcatctaactcttggcaagaaagcgaatatgcctatttcccaaaaaaaaaaaatctttttaagtTTACCTTAAAAAAATGTCTCTGAAGTAAACGGTAAACTGCCATTTATCTATTTCCCGGCAACAATCTTCAATGTGCTGTGCAACGCCCACACGTTGCCTAATGCAATATTATATTTCTTCGCTGTCCCTTTACTGTTACTGACTGTGACCAAATGATGCACTAAGAACAATTCAAATACAGGATTTCAGTGTGTTTCACAAAATACTGCCATTACCTGGCTGCAGTTGCCTGCGTTCGTCAACACTGTTTGCATCTTCAAAGCCAAAATAACAATTCTTGCAGAGGCAAACAGAACACATCAGATGATGAGGCAAATGTGATTACAGGTTAATTTATAGCACATAtgaaagatttatttatttatttatttatatatttccttTTTCTGCTTGGGTCACCACAGTTACATTATATCGAAGTTCTATGGGGGACAGAGACTGGGagctgtgtgtgcttgtgtatgtGGGATAAATGGATGAAGTGTAGGCCCTTCAGCAGACATGCTGCAAAAACACAGcactagaatatataaatacagtatacagtacaggtcTGCATACCTGGGACACATAACTCATTATTAAATGttcatcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggaccgTAATACTCAAACAACCTTAGTTCTATTTGAAATATGGAGGTTATTCTGTTCTGATAGCCGTGTAGATGTAAAATACCTTATGCACAACTGTATCTGAAACTGTGGGCTGTTTCAGCTGTGCAAAGACAGTTTTAGAGCACCGTTCACACAACTAGTTggtctttttattttcttcttttttttttttgaacaaaCGCTGGGatttaaaaagggaaaacatCCAAAGTTCAGTAGATCATTTACCACCCTGTCAAAATGTGTTGAAAAGCCTCTCAGCGGGTAAAGACGCCACTTTGAAACATGTTGTCTTGTCTCCTCTATTACTCGCTGTATTTCTTCTTTGTATTCTTGTGCATATGTGTAATCACACCTTCTGTCTTTATTTGTTTTCGTGATGTAGAATGTAGAGTGTAGGACTGTATTTGAATCAATGCCAGACTCAcatttgctttttgtttgtgtctttgtcctGTTTATGTGTAACCAGCTATGTACCATCAGTATCATTATGCTGAATAGGAAGCAGGCTCCTTGATTTCTCCACAGAATCTGCATTTTGCTGAGCGTAAAGAATGCCGGCCTTTATGTTTACAACATGGACATACCGTATACTGCCAAACATGCAGGACCGTACCAAACTTCCCCTCTTGAGCGCTTAGTCCTCCACCTCTCATCCCTGATGCAACTGTATTCTCAAgactctcttttctttttttcacctctttctcttctccgTCAGTTTTTGAAGCGTCGGAGGACAGTCAGGTTGTGTCCTCTAGCTGTGTTTCTTCGTGTCTAGTGTCGTGGTGCGCGTGTTCATGTCAGTACTTGTGCCTACTGTGGATCGCATGCTTTAGCCCTTGACTGGACACAAACGTTGCTCACAAACTCCTCTTGACCCTTCTGTGGAAAAACGTTGGGGATCCTTATAAAGTTATCAAGGGAACCAAATAACTTATTACAAATTTATCATATGTGTTACCAGttctgtaaaaaacaaatagGAAATAAAGGCCTTTTAATTACCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66203 lncRNA upstream 16858 13616877 ~ 13641874 (+) True G49562
TU66214 lncRNA upstream 19639 13636866 ~ 13639093 (+) True G49572
TU66127 lncRNA upstream 211997 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 225515 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 280323 13365731 ~ 13378409 (+) True G49474
TU66236 lncRNA downstream 101 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 101 13725088 ~ 13732249 (+) False G49585
TU66244 lncRNA downstream 24571 13749558 ~ 13750842 (+) True G49591
TU66249 lncRNA downstream 33600 13758587 ~ 13992115 (+) True LOC120558703
XR_005639166.1 lncRNA downstream 33794 13758781 ~ 13762003 (+) False LOC120558703
XM_039801870.1 mRNA upstream 1356 13655553 ~ 13657376 (+) False oard1
XM_039801871.1 mRNA upstream 1356 13655713 ~ 13657376 (+) True oard1
XM_039801872.1 mRNA upstream 4072 13652368 ~ 13654660 (+) True guca1b
XM_039800919.1 mRNA upstream 8836 13642629 ~ 13649896 (+) True LOC120559296
XM_039799865.1 mRNA downstream 388028 14113015 ~ 14120997 (+) False hmga1a
XM_039799864.1 mRNA downstream 388259 14113246 ~ 14120997 (+) False hmga1a
XM_039799866.1 mRNA downstream 388385 14113372 ~ 14120997 (+) False hmga1a
XM_039799867.1 mRNA downstream 420240 14145227 ~ 14185140 (+) False LOC120558708
XM_039799868.1 mRNA downstream 438343 14163330 ~ 14185140 (+) True LOC120558708
TU66161 other upstream 123810 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 774445 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 1000424 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1200293 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1435094 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66274 other downstream 388063 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 388281 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 388281 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 839880 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 849555 14574542 ~ 14577572 (+) True G49776

Expression Profile