RNA id: XR_005639166.1


Basic Information

Item Value
RNA id XR_005639166.1
length 404
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120558703
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13758587 ~ 13992115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGATGCGCTAGTTTGTTTACCTGCTGCACACGTCACGCCCTTAATTGGCATAAGCCACACCTGCCTACCTGTTGAGGACCAAGTGGAACTGCGCccaaattttgtgctgCAACAACTTGTGGAGAAAAACTGGAGCTGGCCTTGGGGGAGGACTCCTTCAGACTTGTAGTGGACGACTTTTAAAGTTTCTGTGGAGTTTTAATAGACTGGTGAGACGGATGGCCTAAGTGGAGAACTTCTACAACACATTGACTCCATGAAGGACGGACTTGTGGATGGAGTTTTTCAAGCAGACCTCAATAATTCTATTGCATCATGACAAATTCTCAAACCTTGGACGTTGATCATCGCTTCTGTTTTACGTCCATCTACCTCAAAGCGGTATTTCCCAGAGTGCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66244 lncRNA upstream 7939 13749558 ~ 13750842 (+) True G49591
TU66237 lncRNA upstream 26532 13725088 ~ 13732249 (+) False G49585
TU66236 lncRNA upstream 30684 13725088 ~ 13728097 (+) True G49585
TU66235 lncRNA upstream 33791 13663887 ~ 13724990 (+) False LOC120558697
TU66214 lncRNA upstream 119688 13636866 ~ 13639093 (+) True G49572
TU66253 lncRNA downstream 2556 13764559 ~ 13766112 (+) True G49598
XR_005639167.1 lncRNA downstream 17264 13779267 ~ 13798652 (+) True LOC120558704
TU66277 lncRNA downstream 361649 14123652 ~ 14124536 (+) True G49619
TU66339 lncRNA downstream 461292 14223295 ~ 14223723 (+) True G49663
TU66338 lncRNA downstream 464679 14226682 ~ 14227846 (+) False uhrf1bp1
XM_039799842.1 mRNA upstream 33794 13658732 ~ 13724987 (+) True LOC120558697
XM_039799865.1 mRNA downstream 351012 14113015 ~ 14120997 (+) False hmga1a
XM_039799864.1 mRNA downstream 351243 14113246 ~ 14120997 (+) False hmga1a
XM_039799866.1 mRNA downstream 351369 14113372 ~ 14120997 (+) False hmga1a
XM_039799867.1 mRNA downstream 383224 14145227 ~ 14185140 (+) False LOC120558708
XM_039799868.1 mRNA downstream 401327 14163330 ~ 14185140 (+) True LOC120558708
TU66161 other upstream 223859 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 874494 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 1100473 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1300342 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1535143 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66274 other downstream 351047 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 351265 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 351265 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 802864 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 812539 14574542 ~ 14577572 (+) True G49776

Expression Profile