RNA id: TU66275


Basic Information

Item Value
RNA id TU66275
length 2529
RNA type TUCP
GC content 0.43
exon number 5
gene id hmga1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14113015 ~ 14121022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCAGTGCAAGGCTTTTTAACCGGGTACAACCAGCCAGGCTTAAAGGAAACATTCCGCCTTTACTAAGAGCAGAGGTTGTAGCCGCGCGATAAAGGTGAGTGCAAGAAACGCGACGGCGAGCGGGTGGAACTTTGCATGCTCGATAAAACGGAACCGGATTTAATGCATTTTACAGCTTAGGCTATAGCTGGAGCTCCGGTGAGGGGAGGCTGCACGCTTTAAAGGTCTGAAAAGCTAAGCAAACATGAGCGACAAGGGGACAGTTTCACCGAAAGAGAAGGAGGCAACAGAGAAGAGGGGTCGTGGAAGACCCCGCAAGCAGCCCCAAGTGAAGACCTCTGACGAACCAAGTGGGTCCCCTACTCCAAAGAGGCCCAGGGGACGGCCGAAGGGCAGCAAAAACAAGGCAGCCAGCAAGGGCAAAAAGGCAACAGCATCCCCATCTGTTGGGGGGAAACGCAGGGGAAGACCTAAGAAGGAGGAGAAGGAAGAAAAGGCATCCCAGGAATCatctgaggaggaggaagatgaagaagaggacCAGTAATTCACAACGCATGCTACCTCACTCAACATACTGACTTACTGTTAACCAGAACTGGGCTGTATCTCCAACACCAGTGCCACCACATGACCACTGTTCACGACAAAGCCCTCTTTGCCAAAAAGGAGGGTTAACACAGTACAAATATCATGCAACAGCACTGGATAGAACGATGGACCTTGCTCAAGCATAGATCTAAGAATTACATGAAAGGTAACAGCCCTTTTCTCTACATGTCACGTTATCACAAGTCTTTTATACTGGACAAAAGTGTGCTCTCAGGAGCCTGGACATTTCTGTTCCCCCCCACCCTAAAGATGGTTTGTAGGACATTTTCTCTGCTTAATGTTACTTATTTGTTGTACCCGCATCTGAGATGGTAGGGCATATAGATTTTTCTCCGTGTTTTGTACTGGACAAAGGTGAATTTTACCTAtacttggtgttttttttttttttttttttggttttgcttGTGTGAAGTGGTTAAACTATCCTTTGCATCGTATTATAGATGGAGTTGAGCTTCAGCGTTTAGGATGAGAATAGGTAACAGATGGTAGAAGTGTTCTCCCCATTTCTAATCTGCATAACTGATTTCACCCCGTCCCACCAGTAGAGCAGGACAGTCTTTACCCCATCCTGTAGGACGGTTTAAAGTTAGGCTTCTTGAACTTACTTTGCGGTCCTCGGCGTGTAGTGGGGAGATGTGTGTACCGTTGGTCCGATCAGACTATTCTGATGAATTACTGTTTTGTTCCTTAGGGTTACataccatttaaaacaaacaaaaaaccatGAGTGTGCTGCTTTTCATGTTGTAATAAAactcaaatcttttttttggtatataatgtgtgttttttaaggATAGGGTTGGCAGAGTTCTAGGCAGAGAGCATCAGTGTCATCTCTTCAGGGAGCTTTTACAAATGCTGTTGCATTGGCATCTTTTGTCTTCACGTGGTCCTCAGTTTCCAAGCGCTCACCCAATCACTCGTAAGACAAATTGCAATTGGTCGAACAAGGAGTTTGATTGTAATAGAGGATAGTTGGTGGCACTACTATCCAACAGGGCTGTACGTTTTTCATTCCATCTAGCTCTCACGGCTTCATCTAGCTTGGTCCTTCTGTCATCACTTAGTACAGTAATTAACTTCTAGTCTTTTTAAAGATGTGTGGTGTATGCTGTCTGCTACAAGAAATAAATGGTTGTGTATTTCTAAGTGTCAGGGAACCTGCAGTCACAGTCCACTTAACTGGGTTTTTCCACACACCTAAGCTGCTATAACCTGTTACGAAACCCGGAAAACTGCAAACAGGCGATACAAGGCCTGGAATTTCATACCTCAACAGCTTACTTTACCATATAATTGCATTAAACtggttgtcatttttaaatgtaaccTCTGGCATGATTTGGGAAGATGTTAATtcaaagttttgttttttttgtttaacctgACTGTAATGAGCTATCTAAGATGTCGTTTGTCATTGTGTGTACACACGCAGCACGTCTTGGCTCGTTCGTAACCGGAGCTTGCAGACaggttgttttaaatgtgtgaaGCAAGTCAGGGAGACCTGTCAGCTTGACAACTGTGTTCGCTGACTGTGGTAGATTAGCaggtgtgtttttattcttctggTGCACTGAAATGTTGCTTCAGATTTTCATGGacaaatgtttgtgtgtttgtgatagACTGGGCGCTCTTTCCAATTAACGGTTCTGTTGGCCAGTGTGTGGGCTTGGCACTACCACACACAGCCACCCTCGCCATACTCATACAATGTATATCTTGCATCCGTTCATTTATATACTGTAAACTCAACAGGAAGGGGATCATTCTTTTTAATGTACACCGTatataaatgtacaatgtctaTATTTCTATGGTGCCCTACAACAATTTGTATCAGAAATGGTCAATAAAGAGaattttctttgtcatttttcGAAGTCATGTATTTTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66249 lncRNA upstream 121153 13758587 ~ 13992115 (+) True LOC120558703
XR_005639167.1 lncRNA upstream 314616 13779267 ~ 13798652 (+) True LOC120558704
TU66253 lncRNA upstream 347156 13764559 ~ 13766112 (+) True G49598
XR_005639166.1 lncRNA upstream 351265 13758781 ~ 13762003 (+) False LOC120558703
TU66244 lncRNA upstream 362426 13749558 ~ 13750842 (+) True G49591
TU66277 lncRNA downstream 2630 14123652 ~ 14124536 (+) True G49619
TU66339 lncRNA downstream 102273 14223295 ~ 14223723 (+) True G49663
TU66338 lncRNA downstream 105660 14226682 ~ 14227846 (+) False uhrf1bp1
TU66333 lncRNA downstream 107348 14228370 ~ 14229092 (+) True G49660
TU66341 lncRNA downstream 108623 14229645 ~ 14230394 (+) True G49665
XM_039799842.1 mRNA upstream 388281 13658732 ~ 13724987 (+) True LOC120558697
XM_039799867.1 mRNA downstream 24205 14145227 ~ 14185140 (+) False LOC120558708
XM_039799868.1 mRNA downstream 42308 14163330 ~ 14185140 (+) True LOC120558708
XM_039800932.1 mRNA downstream 84575 14205597 ~ 14227888 (+) True uhrf1bp1
XM_039800130.1 mRNA downstream 110113 14231135 ~ 14302859 (+) False LOC120558842
XM_039800120.1 mRNA downstream 110116 14231138 ~ 14302859 (+) False LOC120558842
TU66161 other upstream 578346 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 1228981 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 1454960 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1654829 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1889630 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66523 other downstream 443845 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 453520 14574542 ~ 14577572 (+) True G49776
XR_005639382.1 other downstream 731374 14852396 ~ 14852469 (+) True LOC120559927
XR_005639381.1 other downstream 732532 14853554 ~ 14853627 (+) True LOC120559926
unassigned_transcript_225 other downstream 891873 15012895 ~ 15012967 (+) True trnak-cuu

Expression Profile