RNA id: TU66341


Basic Information

Item Value
RNA id TU66341
length 507
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G49665
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14229645 ~ 14230394 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTATTTGAGCGCCACTGTTAGACAAATCAAGCTGCAGAACTCACAGATTTAACCTCCTGTTTGGACTCATCTTGCGAGGACGACTCTTTGTTATCATCTGTGGGTTTTGCTGTAGCAGGCACATCTTCAGTTCCCCCTGATTTAGGATGCTCCTCGTTAGCAGAAGCTGTTCTCTCGGGTTTAGCTTCAGGTTTGATCCGTGCAGGGTCAGCCATAATTACTCAGTCCCTCCAACAGTGGCTGACAGCTTCAGATTCTTCTGCAGCTAGGCGTCAACAAAACAGCAGCAATAGCCAAGCTAACGGCggaggtaggctaacgttagtttcATGGATGTGGAAGGTTAGTTTAGTAAGTGGCCCTAGTTGGCAATGAAGCTAACACATAACGCAGAGATTGCCCTTACaattaattacattacattgcaaCTCCTTAGTCTAAGAGAAATGATGGCATCAGAATGCTAGTTTTCTCGGCTTATTGATAGCATTAGCACCGGGGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66333 lncRNA upstream 553 14228370 ~ 14229092 (+) True G49660
TU66338 lncRNA upstream 1799 14226682 ~ 14227846 (+) False uhrf1bp1
TU66339 lncRNA upstream 5922 14223295 ~ 14223723 (+) True G49663
TU66277 lncRNA upstream 105109 14123652 ~ 14124536 (+) True G49619
XR_005639167.1 lncRNA upstream 430993 13779267 ~ 13798652 (+) True LOC120558704
TU66419 lncRNA downstream 172312 14402706 ~ 14403546 (+) True G49718
TU66418 lncRNA downstream 173501 14403895 ~ 14409162 (+) True G49717
TU66422 lncRNA downstream 180973 14411367 ~ 14417663 (+) True G49720
TU66488 lncRNA downstream 288380 14518774 ~ 14525189 (+) True G49743
TU66507 lncRNA downstream 315001 14545395 ~ 14546722 (+) True G49761
XM_039800932.1 mRNA upstream 1757 14205597 ~ 14227888 (+) True uhrf1bp1
XM_039799867.1 mRNA upstream 44505 14145227 ~ 14185140 (+) False LOC120558708
XM_039799868.1 mRNA upstream 44505 14163330 ~ 14185140 (+) True LOC120558708
XM_039799864.1 mRNA upstream 108648 14113246 ~ 14120997 (+) False hmga1a
XM_039800130.1 mRNA downstream 741 14231135 ~ 14302859 (+) False LOC120558842
XM_039800120.1 mRNA downstream 744 14231138 ~ 14302859 (+) False LOC120558842
XM_039800125.1 mRNA downstream 745 14231139 ~ 14305611 (+) True LOC120558842
XM_039800124.1 mRNA downstream 745 14231139 ~ 14303819 (+) False LOC120558842
XM_039800121.1 mRNA downstream 745 14231139 ~ 14302859 (+) False LOC120558842
TU66274 other upstream 108623 14113050 ~ 14121022 (+) False hmga1a
TU66273 other upstream 108623 14113268 ~ 14121022 (+) False hmga1a
TU66275 other upstream 108623 14113268 ~ 14121022 (+) True hmga1a
TU66161 other upstream 694723 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 1345358 12860721 ~ 12884287 (+) False LOC120559134
TU66523 other downstream 334473 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 344148 14574542 ~ 14577572 (+) True G49776
XR_005639382.1 other downstream 622002 14852396 ~ 14852469 (+) True LOC120559927
XR_005639381.1 other downstream 623160 14853554 ~ 14853627 (+) True LOC120559926
unassigned_transcript_225 other downstream 782501 15012895 ~ 15012967 (+) True trnak-cuu

Expression Profile