RNA id: TU66510


Basic Information

Item Value
RNA id TU66510
length 250
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G49764
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14551310 ~ 14551559 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTGGATGATGTCGCGTTGTCAAGTGAAGGGGTGGGCTCGGATTTCTGTTTGTCGTTGATGATGAGCAAATCGTTGTTTTTTTTCGGTCCCGGCTGTCTGTTCTCCAGTCCCTATATCCACGAGTTACACGTTACCGGGATGAATCCCATCGGGCAAATTGTGTTATCAATAACCGGGGACCTGTGCAACGTGAGGCGCGCtggttttttggggggagggaGCTGTCTCCTTCCCAGTGCTGAATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66508 lncRNA upstream 4215 14546864 ~ 14547095 (+) True G49762
TU66507 lncRNA upstream 4588 14545395 ~ 14546722 (+) True G49761
TU66488 lncRNA upstream 26121 14518774 ~ 14525189 (+) True G49743
TU66422 lncRNA upstream 133647 14411367 ~ 14417663 (+) True G49720
TU66418 lncRNA upstream 142148 14403895 ~ 14409162 (+) True G49717
TU66525 lncRNA downstream 16766 14568325 ~ 14569597 (+) True G49775
TU66528 lncRNA downstream 33890 14585449 ~ 14590776 (+) True G49778
TU66661 lncRNA downstream 351357 14902916 ~ 14954390 (+) True G49883
TU66663 lncRNA downstream 351357 14902916 ~ 14937460 (+) False G49883
TU66668 lncRNA downstream 351357 14902916 ~ 14970803 (+) False G49883
XM_039800139.1 mRNA upstream 11709 14531154 ~ 14539601 (+) True pcbp2
XM_039800140.1 mRNA upstream 11709 14531154 ~ 14539601 (+) False pcbp2
XM_039801020.1 mRNA upstream 148770 14325802 ~ 14402540 (+) True scube3
XM_039801021.1 mRNA upstream 148770 14325803 ~ 14402540 (+) False scube3
XM_039801713.1 mRNA upstream 233524 14307966 ~ 14317786 (+) True LOC120559736
XM_039800138.1 mRNA downstream 674 14552233 ~ 14561394 (+) False aaas
XM_039800137.1 mRNA downstream 675 14552234 ~ 14561394 (+) True aaas
XM_039800747.1 mRNA downstream 48718 14600277 ~ 14616442 (+) True LOC120559201
XM_039800750.1 mRNA downstream 68589 14620148 ~ 14672002 (+) False LOC120559203
XM_039800748.1 mRNA downstream 72772 14624331 ~ 14672002 (+) True LOC120559203
TU66274 other upstream 430288 14113050 ~ 14121022 (+) False hmga1a
TU66273 other upstream 430288 14113268 ~ 14121022 (+) False hmga1a
TU66275 other upstream 430288 14113268 ~ 14121022 (+) True hmga1a
TU66161 other upstream 1016388 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 1667023 12860721 ~ 12884287 (+) False LOC120559134
TU66523 other downstream 13308 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 22983 14574542 ~ 14577572 (+) True G49776
XR_005639382.1 other downstream 300837 14852396 ~ 14852469 (+) True LOC120559927
XR_005639381.1 other downstream 301995 14853554 ~ 14853627 (+) True LOC120559926
unassigned_transcript_225 other downstream 461336 15012895 ~ 15012967 (+) True trnak-cuu

Expression Profile