RNA id: TU66523


Basic Information

Item Value
RNA id TU66523
length 2355
RNA type TUCP
GC content 0.44
exon number 3
gene id G49773
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14564867 ~ 14567456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAAgtcaagcttttattttctcagGACAGACCGGAGAGGAAGCTGGCCACAGTACAAGATGCAGCAATTCAGATGCATCATTACTCTACAAAATGCTTGAtttcagtcaaaaaaaaaaaaatctttatttatgCCTCTTAGTTCAGACAAAGCCATCTACGCCCAGCACCACCCTGACAACGCAGAACTAATACAGTACTTTTGTTCCTGTTGTGATGAGATTCTCTCATATGAAAATACACACTTGCATCACAGTCTTAAactttcacacactcacacacacagactatgCACTCACAGTCAAGAGTAACTGACCTCATGAAATACAagtataacaacaaaaaaacatctaagCACACATGAATGGTTCTGCTGAAAGAAATACGTCCCCACGCCATTTCCGTTTTTATTCAAAACTCAATTAAAAATCAACTTCATTCTTAATTCggttttccttttattttccaaTTTACATCAATTAGAAgtgtaacaaaataaaaacaaaaatgatcataataaaattaattaaaaaaatgtacacgccctcacacacacacagacaacccaCCCTGGTTGTTTTTGAGCGACCGTCCTCGGAGTCCTGCGTTTAGCTTTTCGGGCTCCAAGGGAGGCTTTCCGAGTAGCCCCTGTCTCCCCTGTCTTTACCCGACTGCACCCCTCCTCCAGAgtggagtgtgagtgtgtggtgtgAGGCTAGTGGGAATtaggtttgggtggtgggggcgACTGAATTACAGAACTCATAGCACCTTCTGAAGAGAGCAACCCAAAGCAAAGATGGCCATTCAGCCCCATATCCACCTGAAAGCTAATTTTTGGTCAGCTCAGATTTAAACTCAAcattttcactttgtttttcAGCGTGAGGTAGCTTTAAACAATCTGGATggctacaataaaaaaaaagcaaaacaaatttccctCAAATTCTTTCAAAATATTTTTAGTTTGGACGAGAACTGGGCCTTCCTCTGATGGGCAGTCAAGGGGTACAGGACATTGAAACATACATCCCAAATGTAACCTCACTTTCCAAAAAGTGTTGGTGTGCATATAGACACATGTACGCACATAATgtggaaatatatataaaaccatCTGGTTGTTTATAAACACAGACTTTTACAACAATAGAACCAAGGATTTATAATACACAGTAAAGGGTTGACTCCTGGTCACGATGGACAGGCCTGGAGCACCTGGATTTGATTTTACTGAGGATATTTATTTTGGTCTACACTGATTCAAAatgctgtatttgtgtgtcagGAGGGAAACAGGGAGGGAGGTGGAGTAGGACTGGGACAGAGGCTGTGCGGCTGTTCTGTAGTGGAAAGGGGGCTTGTCTTACTTACAAAGTAAACCCGTCCAGTCCTACCTCAACTCTGCCCATTCAGGTTAGACAATAAATAAGTGACATCAAGTCATGTTTCTGTTCTCCATAACTTGTTCGCTTGGTCCCTCTTCCTCCTGGCTCTGACTCATTCCCGTCAACAGTGGGCCATGGGAAACATGACTGGATCTCAGGAAGCGGGTTGACAGAGAATGCTGGTGTGGTGTACAGATATTGCCGGTGCCCTTCAGTGCTAACATCCAGGGAGTACAACTTGGAGAGCACTTCGTTGTGAGAGAAAAAGTATCAATTTTCTTTTATAATTTCCAGTCTTCTTTAttgtggaagtgtgtgtgtaatggttCATGGTtgagtttatttatttcctgtgttttttggGGGGCCATTGTGATATTCCACTTTACAAGAAGCAGACTGCGCCTACTTCCACTCCAAACTCCTGATCCGCTCCTCCGATGTCCATGGGAGCAATGTCCACGATTGGCAGACGGGAGGTTTTCTGTGTTTTGTACTCAAAGACAGTCTTGCCCCACCGGTCTGTATGTTTCTTGCAGCCATCCTCCAACACGGTGTATGTGAAGCGACTGGTGCCCTCTGCGCGGATCTCCACATCGTTGGAGCCCTGCAGCTTCAAAGCCTTCTTCAGGTTGCCTGTGGCCTGGTCCATGTAGGCAATGCTGTTCTTGCAGTGGTAAGTGAGATTCTGGGATGCCTCAGTGGACAGAAGCCTCAAGAAGGTCAGCTGGATACTGGCAGCGTTGGCAACAGGGCCATCCTCGGCGTAGTTAAAGTGGAATCCTCCATTCATGGTCTCTGCGAACCAGACGTGTTTGCGGTCCTTGCTCTTGCTGGTCCACCAGTTCTTCTTTGGTACCTCGGCGATGCTTGGGTTGACGCAGGTCTCTCCTGTCTCCATGTTACAGAAGACCTTGATGGCATCGGCTGTGCTGCCAATGTTGGGATCAACCCAGTAGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66510 lncRNA upstream 13308 14551310 ~ 14551559 (+) True G49764
TU66508 lncRNA upstream 17772 14546864 ~ 14547095 (+) True G49762
TU66507 lncRNA upstream 18145 14545395 ~ 14546722 (+) True G49761
TU66488 lncRNA upstream 39678 14518774 ~ 14525189 (+) True G49743
TU66422 lncRNA upstream 147204 14411367 ~ 14417663 (+) True G49720
TU66525 lncRNA downstream 869 14568325 ~ 14569597 (+) True G49775
TU66528 lncRNA downstream 17993 14585449 ~ 14590776 (+) True G49778
TU66661 lncRNA downstream 335460 14902916 ~ 14954390 (+) True G49883
TU66663 lncRNA downstream 335460 14902916 ~ 14937460 (+) False G49883
TU66668 lncRNA downstream 335460 14902916 ~ 14970803 (+) False G49883
XM_039800138.1 mRNA upstream 3473 14552233 ~ 14561394 (+) False aaas
XM_039800137.1 mRNA upstream 3473 14552234 ~ 14561394 (+) True aaas
XM_039800139.1 mRNA upstream 25266 14531154 ~ 14539601 (+) True pcbp2
XM_039800140.1 mRNA upstream 25266 14531154 ~ 14539601 (+) False pcbp2
XM_039801020.1 mRNA upstream 162327 14325802 ~ 14402540 (+) True scube3
XM_039800747.1 mRNA downstream 32821 14600277 ~ 14616442 (+) True LOC120559201
XM_039800750.1 mRNA downstream 52692 14620148 ~ 14672002 (+) False LOC120559203
XM_039800748.1 mRNA downstream 56875 14624331 ~ 14672002 (+) True LOC120559203
XM_039800749.1 mRNA downstream 56875 14624331 ~ 14672002 (+) False LOC120559203
XM_039801618.1 mRNA downstream 108816 14676272 ~ 14684010 (+) True LOC120559695
TU66274 other upstream 443845 14113050 ~ 14121022 (+) False hmga1a
TU66273 other upstream 443845 14113268 ~ 14121022 (+) False hmga1a
TU66275 other upstream 443845 14113268 ~ 14121022 (+) True hmga1a
TU66161 other upstream 1029945 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 1680580 12860721 ~ 12884287 (+) False LOC120559134
TU66526 other downstream 7086 14574542 ~ 14577572 (+) True G49776
XR_005639382.1 other downstream 284940 14852396 ~ 14852469 (+) True LOC120559927
XR_005639381.1 other downstream 286098 14853554 ~ 14853627 (+) True LOC120559926
unassigned_transcript_225 other downstream 445439 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639300.1 other downstream 1204761 15772217 ~ 15798957 (+) False zmp:0000000926

Expression Profile