RNA id: TU66852


Basic Information

Item Value
RNA id TU66852
length 1691
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G50045
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15776217 ~ 15867369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGACCAGCGAAGCAAACCAGGAATGAAATTGTAAACTAAGTGTTGTTGTCTGCTTCTCAATAACAATTGCTGAAAGGCACCGACCTAAGGACAGAACATAACATGTCTGCATCAGGCCAAACACTTTGCAAGGATCTCAACTCTGATCTTAAAGTGAGTATTATGAGAACATTGTAATAAgattgttgttaaaatgaaaaatttacaaaaatgacTGCTCCGACAAATGCATCTTGTTTATTACATGGTCGCACATTCCAAACTGACTTTTCGTGTAGAAATATGCAGGAGTTCCAGGGCATGAGAGGGGGATAAGAAGTCCTAAGGGTATCtaaaacatacagtaatgtATACAATGTGTACATAAGaacacagtacagtatacaaACTAGATCCAGTACATTGCTCTAAAAGTATGATTAGTCTACCAGAGCCTGGTGTAAAACTATGTTGAGTCATGGATATGTTCTGCTTTGTGCACACATACATTTTCTGCCCAGCTAAACAACATCAGCCCCTCAGTAAGATGATTTGTAAACTGGCTGTGGCACTTTAATGTTAAGATTTAgtcagaaacaaacacaaagttgATATTTCGAGCAGCTAAACTGGTACACTATGTGGCCTCTATAGAAAATACAAGTAATTTGGATACATTTACACAAATTCTGTATACATGGGCTCCAAAACTAGTTACAAACTCTATTTACAACGATGCAAGAGATGGtagaaaaatacagaaacatTCAGCTACAGTATTCGACTGAATCTTGCAAAGTCGTTCCATTGTTTCTATCAGCGGCATCCAATTGAGATTCCAGTTTTCCACAGATGACCGTGGAGTCACagagaaatacaaaaataacactCTGGATCTTCTCTTGCTCAGGATTACTCCACTCCTTTCATGAACTCCAAAAACTCATCGTAGTCAATTTTGCCGTCGTTGTTCTTGTCCCCGTCTTTCATCAGCTCCTCAATGTCGTCCTCAGTAATTGCCTCTCCTGTAGATTCCAGCATCATTTTCAGCTCGTCCAGGTCAATGTAACCATCTGCGTTCTTGTCAAACATGCGAAACAGCTCTGCCAGTTCTTCCTCTGACTTCCCTTTGCTGTCGTCCTTCATGCACCTTACCATCATGACCAAGAACTCGTCAAAGTCCACCGTCCCACTCCCGTCTTCATCCACCTCATCAATCATCTCCTGCAGCTCCTCTGGTGTGGGGTTCTGGCCTAACATCCTCATCACCTTCCCCAGTTCCTTGGTGCTGATGCAGCCATCTTCTGCATCTTGTACGAAGATGTCAAAGGCGGCCTTGAACTCATTTTTCTGTTCTTCTGTCAGCTGCTCAACCGCTGCCTTGTAGATGTCGTTCATGTTGGAGGCTCGTCTGCTGCCTGTCCTGGTGGCGTCCTGGCACAGAGGAAGGAGGTACTGTCCAGCTCAGAGCAGGACACTGGCCCCATCCTGGGAGGGTTTTATAGCTggagcctgtctctgtctggTCCTTCCCCGGGCGGACCAGCCTCCCCTCTGTTTGTGCCTACCCGTGTGTCCatcaatgtgtgtttgtgtatgtgtgtcatttGGCCAATCTATCACAATCACCGGGCTCAGATAAAAATGCGGCAGCTCTTAGGGGGCATACTTGGGAATGGAATGAAGTGAGGGGGGCATGGTGAAGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66832 lncRNA upstream 157340 15705096 ~ 15705468 (+) True G50029
TU66817 lncRNA upstream 193264 15667249 ~ 15669544 (+) True G50017
TU66818 lncRNA upstream 193264 15667249 ~ 15669544 (+) False G50017
TU66810 lncRNA upstream 223507 15637483 ~ 15639301 (+) True G50011
TU66813 lncRNA upstream 440200 15422319 ~ 15422608 (+) True G50014
TU66873 lncRNA downstream 26656 15894025 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA downstream 81880 15949249 ~ 15951172 (+) True G50077
TU66874 lncRNA downstream 97654 15965023 ~ 15969331 (+) False slc6a1a
TU67072 lncRNA downstream 418188 16285557 ~ 16285759 (+) True G50218
TU67076 lncRNA downstream 437980 16305349 ~ 16311017 (+) False LOC120559121
XM_039801853.1 mRNA upstream 7765 15850652 ~ 15855043 (+) True LOC120559823
XM_039799422.1 mRNA upstream 15013 15841943 ~ 15847795 (+) False LOC120558427
XM_039799421.1 mRNA upstream 15013 15842747 ~ 15847795 (+) True LOC120558427
XM_039799423.1 mRNA upstream 15013 15842931 ~ 15847795 (+) False LOC120558427
XM_039799353.1 mRNA upstream 22031 15833183 ~ 15840777 (+) False spo11
XM_039801455.1 mRNA downstream 18621 15885990 ~ 15895825 (+) True slc6a1a
XM_039801506.1 mRNA downstream 55005 15922374 ~ 15933298 (+) True syn2a
XM_039801507.1 mRNA downstream 55292 15922661 ~ 15934225 (+) False syn2a
XM_039801510.1 mRNA downstream 85133 15952502 ~ 15956674 (+) False cnbpa
XM_039801513.1 mRNA downstream 85133 15952502 ~ 15956674 (+) False cnbpa
XR_005639300.1 other upstream 63851 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 849841 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1009181 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1010339 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 1285236 14574542 ~ 14577572 (+) True G49776
TU67106 other downstream 507939 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 507939 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 512675 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 531828 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 1110529 16977898 ~ 16994701 (+) True eif2d

Expression Profile