RNA id: XM_039800592.1


Basic Information

Item Value
RNA id XM_039800592.1
length 1217
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120559121
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16304312 ~ 16311017 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGCAGAGCAGTTTGTCAGGAGTGAACCCATCAACCACAGATGAGTCCAACACGAGGAATAATAACCCTGCCAAAGACTTTTCCATTCGTATTATATCAGTGTGAGGACACATTACACTGGAGACATTGACGATTACCATGAGCAGCTCCAGAGGGACGCCCATTTCCTGTGCTCAGACCAGAGGATGGAAACTGAACTGGTTGACAGACTGGTGCTGCAGCTGAACAGGATATACCCCCAGATACTCAGTGACAAGGAAGCCCACATGTTCAGGAACCTGAGCGTGCCCACCAGGGTGCGGCTACCTGAGCTGTTGAAGCACCTGTATGGGAAGGGCGAGGAGGCGTGTTATGAATTCTACAGAGGACTTCACATCCACGCTGAGGACGTTTACGCCAGCCTGCCCACCAGAGTCATACAAAgagAGGTGGCTGATCCAAAATGGACTAACAATGTGGCGATCCACCCAGAGCGACGTCTGCTTAATGACAGAGGACCAATGTTCTTCCTGAGCTGTTTCAGTTTTGCTGCTGGTATTGCAATGCTCTACTATTACGGAGAAATTGAGACACTGAGAAGCACTGGTCTGTTTCTTCACTGCTCTGCAGCAAGATTTAGTGAAGGTGCTAAATATGTTTTCATTTCTTCTGCTGAGGTTGGAAAGCAGAAGAAATGAGACCGTTAAGATGCTGAAATGCTTAAGAAGTAACCTATGAGAAGAACAAGCTGTGAAAATTGCCACTTTGCTGTGCCAAACTCATACACGCTTTTGAGAGCTAAAAATGTCATGCATTTGTAAGCACtaatttagttgtttttttaatctgaagCTGACAATAACATGAGTTGCTGTGTCTTGAATTCCCACAGCTAACATCTATTtacatgaaaaaaatgtaatgagtGTGATCTGGATTTATTGTGTGTACAGAACTATTGATTCCAATCAGCTAAAATTAGTAACTGcactagcctgggaaaaccctgaacttctagcaaatttgagatttgctctgcaagccactctcagttacaactgagaagggtctggtgtcaaccaggctataaCTGCACACCCAAACAGGTGTTTTCAACtcagcatttgtcgcaagtcagccaacgtggttgtgttggtcactctggcacgaacagcacgcccaagctgatcccacaagtgttcaatggggttgaggtcaggactgctggttgaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67072 lncRNA upstream 18553 16285557 ~ 16285759 (+) True G50218
TU66873 lncRNA upstream 334981 15894025 ~ 15969331 (+) False slc6a1a
TU66874 lncRNA upstream 334981 15965023 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA upstream 353140 15949249 ~ 15951172 (+) True G50077
TU66852 lncRNA upstream 436943 15862808 ~ 15867369 (+) True G50045
TU67104 lncRNA downstream 54124 16365020 ~ 16379644 (+) False LOC120559119
TU67095 lncRNA downstream 64412 16375308 ~ 16379084 (+) False LOC120559119
TU67180 lncRNA downstream 114722 16425618 ~ 16425820 (+) True G50280
XR_005639171.1 lncRNA downstream 233373 16544269 ~ 16545835 (+) True LOC120558722
TU67226 lncRNA downstream 256105 16567001 ~ 16569382 (+) True G50318
XM_039799253.1 mRNA upstream 20513 16225552 ~ 16283799 (+) True fgd
XM_039799254.1 mRNA upstream 84054 16176577 ~ 16220258 (+) True LOC120558327
XM_039799256.1 mRNA upstream 84054 16176577 ~ 16220258 (+) False LOC120558327
XM_039801419.1 mRNA upstream 130711 16163048 ~ 16173601 (+) True fbxw12
XM_039801420.1 mRNA upstream 137716 16162697 ~ 16166596 (+) False fbxw12
XM_039800576.1 mRNA downstream 11925 16322821 ~ 16379645 (+) True LOC120559119
XM_039800584.1 mRNA downstream 11925 16322821 ~ 16379645 (+) False LOC120559119
XM_039800578.1 mRNA downstream 11925 16322821 ~ 16379645 (+) False LOC120559119
XM_039800585.1 mRNA downstream 11925 16322821 ~ 16379645 (+) False LOC120559119
XM_039800581.1 mRNA downstream 11925 16322821 ~ 16379645 (+) False LOC120559119
TU66854 other upstream 436943 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 505355 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 1291345 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1450685 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1451843 14852396 ~ 14852469 (+) True LOC120559927
TU67106 other downstream 64412 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 64412 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 69148 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 88301 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 667002 16977898 ~ 16994701 (+) True eif2d

Expression Profile