RNA id: TU68358


Basic Information

Item Value
RNA id TU68358
length 549
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G51155
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19439687 ~ 19441326 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTGGGTGAAAAGGGTGACAGGTATCTGGGCGCCTCCTGTCCTTTTGCATCTTCAACCTCTCGCACTTAAGAGATTCATTATACATGATTTCGATGGGGTCCATGGTTATTGACTCAAACATGCTGCAGTCACACTTGTTGTCCACCACCACCATGAAGAGATTACTGCTGGGGATCTGCTGGATCACAAAGGACCTGCCAATCAAAGCACAGGCAgccagaaacaaaaaaaaagatgaggaaggaagaagagagagggagcaaGGGAGGATTTAGAGTGGGATTGGCAAGTTGACAAGGCGCATGTGTATGATATAAATTTCCATGTGTGTCAGAGGATTTGTGTTATGAGTGTTCACATTCTCCCCTGGCGGAGGGGAGATGCACTGAAGAGACTCCACTGGATGCATGTCAAGGAGATGACTTGTCTCACCGCCAGCTGTCAATAAACATACAGAGACATCGACAGACTCGCactaaacagacacacatacaagaaTACACATACTTCTCTAACCCAATCcatcccctcctcttcctcattctC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68184 lncRNA upstream 583161 18855367 ~ 18856526 (+) True G51028
XR_005639332.1 lncRNA upstream 602256 18835280 ~ 18837431 (+) True LOC120559607
TU68172 lncRNA upstream 681290 18758044 ~ 18758397 (+) True G51017
TU68147 lncRNA upstream 751394 18686786 ~ 18688293 (+) True G50994
TU68129 lncRNA upstream 755209 18682143 ~ 18684478 (+) False G50983
TU68370 lncRNA downstream 129867 19571193 ~ 19608956 (+) False G51165
TU68372 lncRNA downstream 146909 19588235 ~ 19590976 (+) True G51167
TU68374 lncRNA downstream 150142 19591468 ~ 19593624 (+) True G51168
TU68369 lncRNA downstream 163452 19604778 ~ 19608956 (+) True G51165
TU68381 lncRNA downstream 175789 19617115 ~ 19618210 (+) True G51174
XM_039800962.1 mRNA upstream 24497 19366783 ~ 19415190 (+) False wnt5a
XM_039800960.1 mRNA upstream 24497 19403132 ~ 19415190 (+) True wnt5a
XM_039800961.1 mRNA upstream 24497 19405475 ~ 19415190 (+) False wnt5a
XM_039800959.1 mRNA upstream 24497 19405475 ~ 19415190 (+) False wnt5a
XM_039800957.1 mRNA upstream 112133 19241532 ~ 19327554 (+) True LOC120559318
XM_039800317.1 mRNA downstream 15151 19456477 ~ 19463712 (+) True LOC120558947
XM_039800274.1 mRNA downstream 326300 19767626 ~ 19768558 (+) True LOC120558920
XM_039800273.1 mRNA downstream 350854 19792180 ~ 19793225 (+) True LOC120558919
XM_039800220.1 mRNA downstream 478068 19919394 ~ 19925436 (+) True LOC120558889
XM_039800223.1 mRNA downstream 500698 19942024 ~ 19951021 (+) False kcna2b
unassigned_transcript_226 other upstream 710136 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 753385 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 1667103 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 2242514 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 2444986 16977898 ~ 16994701 (+) True eif2d
TU68363 other downstream 15165 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 326326 19767652 ~ 19768564 (+) False LOC120558920
TU68517 other downstream 555185 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 555185 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 880185 20321511 ~ 20321582 (+) True trnah-gug_9

Expression Profile