RNA id: TU68370


Basic Information

Item Value
RNA id TU68370
length 3684
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G51165
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19571193 ~ 19608956 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgatctgtCATCTACAAGACAAGGTCAGTAAATAAGGCAACCTAAGATAACGACAGGTATGATCGCATAATGCAAATACCATGTAATGTATTAATTACGTCTCATTTGCCACGAATACATAAACATCCCATCTTTCGCCAATCACTTTAATCATGATTAAATGAActctttaaaatacaaaaaatcttGCCATGAAGTCCCAATCCTGTTTACTGAATTTGCATTCAACTACACAGTATATATTTCCAACACTTATGCGAAAACATCCTTTATAAAAACTAGCCTATTTATTAAATATAGAACAATCTCCAGGTAAGCACACAGTAtgttgattaatctgctgaGATTACATAACGTCCTTAAAAGCTTTCAGTGTGTCACTGCTTCATGTCATACAGGCATTGTCCGAGGCAATATGATATATGGAGGATATATTATCTATTGATATGCAACTAAACTACTATGTAGTATAAAGCTAAGAAATTGGGCTTTATTATCTCTCAATGTACTCTTGTCAAGACAACCGGTTTGTACAGCACTCTTTGTTTAAAACAGGTAATATTGTATCGTAAATAAACAGATTACTTCTATAAAACTATATCCTTTCATTAACACTACCAGCCACCATGTAGGTTCCGTAAACCAGTCAAATTTAGAAAGTTGCTTTACACCTTTAAGCTGGAAGGATCGATCATGTGATACTACGCAAACGAGAAACCCTGCGCACAGAGCAATGCAAAGATTTGATTGGCTGAAAGCTGTGAATGGCTAACATTAATGATTAACATTCTTGTCACAACACTGCAGTTTCATTCAGTCCTTGGTTCCTCATGGCTGGAGCTATGCCACACTGTGCCACTTGAGGGCGCTCACATATAAACCCGGGAGTATTCCTTCTGTCTTTCAGTAATACGGGCATATTTCATGAGGCACGATGTTAACAAAAGAAATGTGGACACGTACTATAAAGGGATAATAATCTGCTCTACAATGGAGAAGCTAACACTAAATACGCACTTTAGAAGTCTGTGCAGTGAGCTCTATCAGTGactcaataaataaatgaattaatgaaaTACATTCAAATTAGCAGAAGTAATACACTACTTGTGAGTATGATAAAACTTCACACCAGAACATTATTGTTAcaatatgtcttttttttctcaagctAATTAATCATACAGTTAACCATTCCCCTAGTCAAATAGCAGCGAGAAATCCTACGAGTGATCAGATTCAAGTCCACGTCCAAAAAACTAACTAACCTCACCTGATAAACTCCCCAACTCAAAATAATACATTCCAAATGGTTATGAAAAAAACGGAATGTCTGAGAGATGTAAAGTAGATGATAATTGATCTGTCAACATTAATGACGAACATGATTTGTCAGccctcaaaataaaattatttatcttCCTTGTCTCCTTTCCTTCAAGATACAAAAGCTTCACTCTAGCAAATAAAGACAGAGTGTGGCAGACACTCATTTATAGCTTTTAGATGCACCATGGTCTTTTATAATATACCGAGACCCTCTGTGAAGGCGTCAGGTCATCTAGGTAAAAGCTGACCTACATCTACAGTATACACAGTGCTTTATCGTTACTATGAccgtttttattattaaaatacaatCTGAAACTGGTAAATGTGTAGTCACGTGCCTACAATATTGTCTGCaaatttgctttttttcccaTACCTGACTAatctaaaagaaaaataataaaatcacaGATAATATCAGAAGCATAAGTCTATCCATGTATCAAGAGTATAGTTAAACTAGACAACAACTATCATGCCAAGTCTATGTTTATCTGACAGGTGTAAAGATAGTGATGAGaatatttcttcattttgttaTGTGGTTGGACACAGAGTTATCGTCCCATATGATTTGATTGTCTACGAACTAAATgtcagagaaagacagagagacagagagagagagagagagagagagagagagaggcaccaGACTGTAAGGAAGGGAGAgtaaaacaaatcaataaacaaataaagaaGTCTCTCCATATAAATATAAACTCTAGAATTGTCTGATAACTATGGAGTTGGTCAGCGCTTGATCAATGCACACAAATATAAAACGGCAGTCCTTGAACAAATCATTTGTCAGGATCTAGGATCAGCTTTTGCCTCACTGCTTTCTAACATTTACCTGCGAGGAGTAAAATTAACCCCAGGTCAGCGTCTAAAAGCAACTATACCAGTCTATAAAATGCGCATATAAGAGAGAAGGCACCATAACACAAACCCACCGTGTAGTGGGGCGGactgacagcagcagttttttGGGAGCAAACTGGATGAAGCTGCAGGTCTGCTGGCAGCAGATGGGTTGCTTACGACTTGCGATGTCTGTCttctcctgtgttgtttgatttGCTGCCTTTGACTGGGCAGGTTCACCAACCAGCTTGGCCACAGTCATGTTTGCCACTTTGCTCTCTTGCCTCTTCTCCTGTTTGGCTGTGCCTCCGTTCTTGCCGGTGCTACGCTGGTTGACAggggttgttgtttttacaggGGAGGGTACTTTCCCCTGGGGCAGACGGGGGTCTTCTCCAATGTCGACAGTGAGGTTGGTGTAGAGAGGCTCCAGCTCTCTGGAAAGGAGCTCGTAGGTCAAAGAGTTGAGGCCGTCAGAGCGCCAGTTGAGTCTGGTCCTTTTCAGAAGGTCAAATCTAGAAAAACATACATAATATCACAGGTTtgttttatctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtacctgtctTCTTAACATACTATATATCCTGAACTCTTGCACATCCCTCAACATTTTTACACATCCTACACTAAACATTACAGCCTTtcttttcttaaaggtcccatggcatgaaaatttcactttatgaggttttttaatatgagttcccccagcctgcctatggtcccccagtggctagaaatggcgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagcccagatgggccgatctggaatcttgctccttatgaggtcataaggaacaAGGTTACcgcccctttctctgctttgccctcccagagaatttggcccacccatgagagagagacatcatggctttcaaacaagcaaagtggcagttggtcaaggctacacccccaccctccaccttgccccctctctctcctcctcaatagctacagacacagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcaggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaagagcaccatgtcatggaacctttaaaggaacacgctgagtCTTATTCACCGTTTCCTATTatagttagataagtccatacatacccttctcatctccgtgagtgtcgtaactctgtctgacgcacccaccgctagcctagtttagcccagatcctggaggtaaccagctctatcgagcctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68358 lncRNA upstream 129867 19439687 ~ 19441326 (+) True G51155
TU68184 lncRNA upstream 714667 18855367 ~ 18856526 (+) True G51028
XR_005639332.1 lncRNA upstream 733762 18835280 ~ 18837431 (+) True LOC120559607
TU68172 lncRNA upstream 812796 18758044 ~ 18758397 (+) True G51017
TU68147 lncRNA upstream 882900 18686786 ~ 18688293 (+) True G50994
TU68381 lncRNA downstream 8159 19617115 ~ 19618210 (+) True G51174
TU68386 lncRNA downstream 11485 19620441 ~ 19624994 (+) True G51178
TU68397 lncRNA downstream 42278 19651234 ~ 19654257 (+) False G51186
TU68398 lncRNA downstream 42278 19651234 ~ 19658721 (+) True G51186
TU68408 lncRNA downstream 60665 19669621 ~ 19671527 (+) True G51194
XM_039800317.1 mRNA upstream 107481 19456477 ~ 19463712 (+) True LOC120558947
XM_039800962.1 mRNA upstream 156003 19366783 ~ 19415190 (+) False wnt5a
XM_039800960.1 mRNA upstream 156003 19403132 ~ 19415190 (+) True wnt5a
XM_039800961.1 mRNA upstream 156003 19405475 ~ 19415190 (+) False wnt5a
XM_039800959.1 mRNA upstream 156003 19405475 ~ 19415190 (+) False wnt5a
XM_039800274.1 mRNA downstream 158670 19767626 ~ 19768558 (+) True LOC120558920
XM_039800273.1 mRNA downstream 183224 19792180 ~ 19793225 (+) True LOC120558919
XM_039800220.1 mRNA downstream 310438 19919394 ~ 19925436 (+) True LOC120558889
XM_039800223.1 mRNA downstream 333068 19942024 ~ 19951021 (+) False kcna2b
XM_039800225.1 mRNA downstream 333068 19942024 ~ 19951021 (+) False kcna2b
TU68363 other upstream 109079 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 841642 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 884891 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 1798609 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 2374020 17185911 ~ 17197173 (+) True G50523
TU68439 other downstream 158696 19767652 ~ 19768564 (+) False LOC120558920
TU68517 other downstream 387555 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 387555 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 712555 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 716213 20325169 ~ 20325241 (+) True trnaf-gaa_3

Expression Profile