RNA id: TU68381


Basic Information

Item Value
RNA id TU68381
length 245
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G51174
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19617115 ~ 19618210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTGGGGACGCGAGTGAGGCGGTTGTTGTCCAGATGCAGCTCTCTCAGCCTGGGGAGGAAGGACAGACTGCCGTTCTCGATGTTACGGATATGGTTAAAGCTAAGGCCCAACCTGTACAGGTTTTTGTAGCGTTTCAGGTCTTCCAGTTCCACAGCCTGGATCTGGTTGTGGTCCAGATGAAGCTCATGGAGACTATCTGGTAGTTCTTTTGGCACCCCAGTCAGTTTGGACTCTGATATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68370 lncRNA upstream 8159 19571193 ~ 19608956 (+) False G51165
TU68369 lncRNA upstream 8159 19604778 ~ 19608956 (+) True G51165
TU68374 lncRNA upstream 23491 19591468 ~ 19593624 (+) True G51168
TU68372 lncRNA upstream 26139 19588235 ~ 19590976 (+) True G51167
TU68358 lncRNA upstream 175789 19439687 ~ 19441326 (+) True G51155
TU68386 lncRNA downstream 2231 19620441 ~ 19624994 (+) True G51178
TU68397 lncRNA downstream 33024 19651234 ~ 19654257 (+) False G51186
TU68398 lncRNA downstream 33024 19651234 ~ 19658721 (+) True G51186
TU68408 lncRNA downstream 51411 19669621 ~ 19671527 (+) True G51194
TU68392 lncRNA downstream 61288 19679498 ~ 19681767 (+) True G51183
XM_039800317.1 mRNA upstream 153403 19456477 ~ 19463712 (+) True LOC120558947
XM_039800962.1 mRNA upstream 201925 19366783 ~ 19415190 (+) False wnt5a
XM_039800274.1 mRNA downstream 149416 19767626 ~ 19768558 (+) True LOC120558920
XM_039800273.1 mRNA downstream 173970 19792180 ~ 19793225 (+) True LOC120558919
XM_039800220.1 mRNA downstream 301184 19919394 ~ 19925436 (+) True LOC120558889
XM_039800223.1 mRNA downstream 323814 19942024 ~ 19951021 (+) False kcna2b
XM_039800225.1 mRNA downstream 323814 19942024 ~ 19951021 (+) False kcna2b
TU68363 other upstream 155001 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 887564 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 930813 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 1844531 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 2419942 17185911 ~ 17197173 (+) True G50523
TU68439 other downstream 149442 19767652 ~ 19768564 (+) False LOC120558920
TU68517 other downstream 378301 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 378301 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 703301 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 706959 20325169 ~ 20325241 (+) True trnaf-gaa_3

Expression Profile