RNA id: XM_039800274.1


Basic Information

Item Value
RNA id XM_039800274.1
length 656
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120558920
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19767626 ~ 19768564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGTTTGTTAGTGGTGAAATGCATGCTGCTGTGTGCATTGATGCATGGAGCGGTGTGTGCCTGTATGCTGAAGAATCACACCATATGGATTGAGAGGCACGACTGTGGCCAGTGTGTGGCCATCAACACTACCATCTGCAGCGGCTACTGTTACACACAGGACACCAATTTGAGGGGACGGCTTGGGAGGAGTTTCCTGATCCAGCGCAGCTGTGTGCCTCTGTCCTTGGTGTACCGAGCTGCCCATGTGCCAGGCTGCCCTCAGGATGTCAGCCCTCAGCTGTTTTATCCTGCGGCCAACCGCTGCAGCTGCAGGCGCTGCAACACGCGCACACATCACTGTGTTCGCAACAGCCGGATCCCTAATGACCGGTGCACCGTGACCCTTGGCCAGACGCCGCCCTCTGTGGGAACCTGCTAACCAAATGCACATGCATGGCAATGCGACAGCTGATGGACTCTCTGCTTGTTGATGTCAGTGTTGTGCATCTCAGCTCCTCATATTGTTTTCTCTAGTTTGTTTGGCAATGTAGGCTATTGCTATAAAACACTATGTTGAACATGTATTTAACTTTATTGGGAAAATTGTGTAAATTAATCAATGACAATGAATATACAAGCAACAGATGAGTGCATAATACGTGTATTTCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68438 lncRNA upstream 5147 19762177 ~ 19762479 (+) True G51218
TU68391 lncRNA upstream 8935 19698081 ~ 19758691 (+) False G51182
TU68435 lncRNA upstream 48189 19716772 ~ 19719437 (+) True G51215
TU68432 lncRNA upstream 52947 19712766 ~ 19714679 (+) True G51212
TU68425 lncRNA upstream 60126 19702830 ~ 19707500 (+) False G51206
TU68450 lncRNA downstream 517 19769075 ~ 19796396 (+) False G51220
TU68443 lncRNA downstream 6762 19775320 ~ 19801577 (+) True G51220
TU68451 lncRNA downstream 9510 19778068 ~ 19805293 (+) True G51221
TU68442 lncRNA downstream 25506 19794064 ~ 19797376 (+) False G51220
TU68534 lncRNA downstream 222215 19990773 ~ 19992193 (+) True G51282
XM_039800317.1 mRNA upstream 303914 19456477 ~ 19463712 (+) True LOC120558947
XM_039800962.1 mRNA upstream 352436 19366783 ~ 19415190 (+) False wnt5a
XM_039800960.1 mRNA upstream 352436 19403132 ~ 19415190 (+) True wnt5a
XM_039800961.1 mRNA upstream 352436 19405475 ~ 19415190 (+) False wnt5a
XM_039800959.1 mRNA upstream 352436 19405475 ~ 19415190 (+) False wnt5a
XM_039800273.1 mRNA downstream 23622 19792180 ~ 19793225 (+) True LOC120558919
XM_039800220.1 mRNA downstream 150836 19919394 ~ 19925436 (+) True LOC120558889
XM_039800223.1 mRNA downstream 173466 19942024 ~ 19951021 (+) False kcna2b
XM_039800225.1 mRNA downstream 173466 19942024 ~ 19951021 (+) False kcna2b
XM_039800224.1 mRNA downstream 173726 19942284 ~ 19951021 (+) True kcna2b
TU68363 other upstream 305512 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1038075 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 1081324 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 1995042 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 2570453 17185911 ~ 17197173 (+) True G50523
TU68517 other downstream 227953 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 227953 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 552953 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 556611 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 677685 20446243 ~ 20532462 (+) False LOC120559772

Expression Profile