RNA id: XR_005639244.1


Basic Information

Item Value
RNA id XR_005639244.1
length 613
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id LOC120559383
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21277776 ~ 21288705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaactcgagagaagaagaagaagtggaggaagaaaaacaaaacacgaatTCAATTTACAAATATTCAGGTCGTGTGGGACATCACTAATGCCACAGGGGGACTGTGAGTTGCTGCGTGTCACCTTCAGCTTGCAGATCTCAGCGGAAGATAGATGACAGACCACCTtacatTCTACTGAAGAAGACTATTTCCTCTGAGCTTCAGAGAAGGGGGCTGTTCTAATGAATATCCGCTTCTATCGCTTACTATACCCTTGTTTCATACATTATATGTTATGGAACAACTGCATCCATCAAGTTCAAGAACCTATTAGatGTCCAGCCAGGGCATCTCTCCGGCGACAAGCATAGCTGCAAACGGGACATTTAAAAGGCTTCTCTCCCGAATGCAACTTGATGTGGCGCAACAAGTTCCCCTTCTGGGTGAAGGAAGCTCCACACTGGTTACACTGGAACGGCCTCTCGCCTGGGAACACATGGATGGACAGAGGATTTTAGAGCGTACTCTGCACTCCCTTCTTCCATGGGGTCCCCTCTGTCATCCCTCCTGCTATCGTCCCTCACAGCCTCTCTGATCTCTGGCCGTGGAGCACCTGGGGACTCCTCATCGC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69050 lncRNA upstream 44269 21230270 ~ 21233529 (+) True G51685
TU68980 lncRNA upstream 55241 21220651 ~ 21222557 (+) True G51625
XR_005639095.1 lncRNA upstream 498399 20772453 ~ 20779399 (+) True LOC120558354
TU68681 lncRNA upstream 525453 20751595 ~ 20752345 (+) True G51386
XR_005639130.1 lncRNA upstream 615245 20661297 ~ 20662553 (+) True LOC120558477
TU69118 lncRNA downstream 76205 21364607 ~ 21365558 (+) True G51735
TU69119 lncRNA downstream 77219 21365621 ~ 21366055 (+) True G51736
TU69120 lncRNA downstream 77899 21366301 ~ 21366577 (+) True G51737
TU69121 lncRNA downstream 78274 21366676 ~ 21367030 (+) True G51738
TU69122 lncRNA downstream 87629 21376031 ~ 21376263 (+) True G51739
XM_039801064.1 mRNA upstream 9552 21263048 ~ 21268246 (+) True wnt1
XM_039801494.1 mRNA upstream 111381 21071707 ~ 21166417 (+) True lrp1ab
XM_039801495.1 mRNA upstream 111381 21071707 ~ 21166417 (+) False lrp1ab
XM_039800106.1 mRNA upstream 231830 21032895 ~ 21045968 (+) True si:dkey-21c19.3
XM_039800108.1 mRNA upstream 246603 21025140 ~ 21031195 (+) True LOC120558837
XM_039801051.1 mRNA downstream 6745 21295147 ~ 21308168 (+) True lmbr1l
XM_039801053.1 mRNA downstream 24150 21312552 ~ 21317922 (+) True dhh
XM_039801052.1 mRNA downstream 24150 21312552 ~ 21317922 (+) False dhh
XM_039799357.1 mRNA downstream 34912 21323314 ~ 21359987 (+) True kmt2d
XM_039801028.1 mRNA downstream 128734 21417136 ~ 21473374 (+) False arhgef25a
TU68644 other upstream 745336 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 952557 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 956216 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 1277360 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 1186 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 72888 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 72888 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 270488 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 494864 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile