RNA id: TU69122


Basic Information

Item Value
RNA id TU69122
length 233
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G51739
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21376031 ~ 21376263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTACCGACTGCCACTAACCCGAACAGGGCAAGCAGTGTTAGGGCAATTTCTTTTAGAGACATTTCTTCAAAATTCCCATCTCTCCAAGATGAAATGCGTCCAAAGTGTGTCGTTATCAACACGACCAGACCTGAAACACAACCACAGTCCGACCGCACACACCACACCGCCAAACgctagccagccagccagccagcctgGCGAGTGACGCGTTTAAAggggtgtgtgcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69121 lncRNA upstream 9001 21366676 ~ 21367030 (+) True G51738
TU69120 lncRNA upstream 9454 21366301 ~ 21366577 (+) True G51737
TU69119 lncRNA upstream 9976 21365621 ~ 21366055 (+) True G51736
TU69118 lncRNA upstream 10473 21364607 ~ 21365558 (+) True G51735
XR_005639243.1 lncRNA upstream 87629 21277816 ~ 21288402 (+) False LOC120559383
TU69145 lncRNA downstream 2738 21379001 ~ 21381249 (+) True G51761
TU69202 lncRNA downstream 201125 21577388 ~ 21578255 (+) True G51811
TU69283 lncRNA downstream 340901 21717164 ~ 21720123 (+) False birc5b
TU69314 lncRNA downstream 436349 21812612 ~ 21813631 (+) True G51900
TU69318 lncRNA downstream 443602 21819865 ~ 21820675 (+) True G51902
XM_039799357.1 mRNA upstream 16044 21323314 ~ 21359987 (+) True kmt2d
XM_039801053.1 mRNA upstream 58109 21312552 ~ 21317922 (+) True dhh
XM_039801052.1 mRNA upstream 58109 21312552 ~ 21317922 (+) False dhh
XM_039801051.1 mRNA upstream 67863 21295147 ~ 21308168 (+) True lmbr1l
XM_039801064.1 mRNA upstream 107785 21263048 ~ 21268246 (+) True wnt1
XM_039801028.1 mRNA downstream 40873 21417136 ~ 21473374 (+) False arhgef25a
XM_039801029.1 mRNA downstream 40873 21417136 ~ 21473374 (+) False arhgef25a
XM_039801031.1 mRNA downstream 61219 21437482 ~ 21473374 (+) True arhgef25a
XM_039801608.1 mRNA downstream 122443 21498706 ~ 21504920 (+) True slc26a10
XM_039801612.1 mRNA downstream 176989 21553252 ~ 21555195 (+) True LOC120559688
TU69117 other upstream 11601 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 12391 21361290 ~ 21363640 (+) False G51734
TU69094 other upstream 85069 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 843569 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 1050790 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU69195 other downstream 182627 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 407003 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 527279 21903542 ~ 21904077 (+) True G51926
TU69454 other downstream 680458 22056721 ~ 22060645 (+) False avpr2aa
TU69473 other downstream 717642 22093905 ~ 22094890 (+) False LOC120558641

Expression Profile