RNA id: XM_039800993.1


Basic Information

Item Value
RNA id XM_039800993.1
length 2474
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120559343
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27585525 ~ 27595409 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGCTCAGCGCCCGGACGGTAGGGGTGATCCGGAGGGGCGAAGACTCCTCGATATTCTCCATCACCACCACAAAATATAGCTACACAGctgagTGAGTGATCCTCATATCCTCAATAGACCAGCTTTGAGCACGTCTTCTTCCGGCGCAGACATGTGACGTAAAGGGCGCAAATATACAACAAGGGAGGTGTTTGTAATAAGTTGAGACGCTGGAGCAAAAGAGAAAAGCTTGCATCCATGGAGAAGATGCACAACTGGCAGGAGAACGAAATCAAAGAACTTTTGATCATCCGGGGGTCGGAGGCGATCCGTGACCAGATGACGGGGACGGTGAAGGACTCTGTAGTTTACAACAGGATGACCAAACTGCTGGCGGAGAGGGGGGTGTACAGATCACACATGCAGGTGATCAGCAAACTGAAGGCGCTGAGGAAGCAGTACACCAAGTaccaccagcagaagacccgcTGCGGGAGCGACCGCGTCGACTGGCCGTTTTATGAGCTGTGCCACCGGGTTTTCGGGAATGCCCCCGCGGGGAACCCGGTGAAACGTCAAAGGACTCCCACACCTCCACCGtcgccccctcctcctcctccacctctgcCGCCTGACGTCAGCGAGGAGCATCAGGAGGTTGTAGTCGGGCTTTGGGACGAAGTTGACGACAGGGAGCTTAACAAGCATCTGGGTTCAATGGAGGCAGAGGACGAGGACGAGCAGTACAGCCCACCAGAACAGTTGCAGCCCATTAACACCACGTACAAAATTCCATCGAAGAAAAGGAAAACGACGGTGATGGAGCAAGTCTCTACGTTAGTGTCAGCGACGGTCAGCCAGCTCCGAGAGATGGACGCGTCCATGCAGGTGCAGGAGGACGCCCGACTACAGAGGTTGATGGACCATGAGAAGGAAATGCAGAACAATCTAATGAGCCAGCTGGTGACCATGCATGAAAGGATCAGCCGAGAAAACCACGAAAGAAACCTTGAACTCGTGGACAGGATACTGTCTAGGTTCCCTTCACCTTCAGCACCTTCGGGTCACTAACTGACACTTCCTGTGTGAGCGGCGACGACGACGTACGACAGGGTTATGCAGGTGTAGGGAACACCTCTGTCCCGCTCTCCTCCACCAGCTGACGTTTGCCCAAattcctttattttattttcacactACAGGCCTTCATGCTCCATTCTGGGTCACTGCTCACATTTATAACTATAAACTCCAAATTATGAAGTCCATTTAAATTAGTTTGCTAGACTATAAATTGGTGGATTTACATACTCTTAAAAATATCTGAATGTGTTAATCACAGCATCACATCTGTAGAGAATTTGGAGAATTAACAGCTGCAGTGTGAGCTTTCAGTTTACATGAAAGCTGATGAATGAGTCCCACAAAGGGCATGGATGGATGTACTGCACCTCTCCTGCCACCTCATCTGAGCACGTTGGTGTAAACCACACAAATCACACCAAGCACCACACAAAGCTGCGGTCTTTTGTTGTAGGAAAGTCGTTACTAAGCTCTAGCTTTCATTTGGGATCATTATGCGGTTACAGCTGATCTGAAGTGGGGCGCCAGTAAATGATACCAGTTCCTGGTAATATTTTTGGAATTTAGAGAAAGTGTTGCTTTGTCAAACATTGATGTaaattcaggtgtgtgtgtctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtgaatatgtatgtgtatatatactgtatgtatgtgtgtatatactgtatatgtgtgtgtatatgtatgtgtgtgtatatatgtaaccTGAACACTGTAGTAGAAGAGAAGCTGCTCTTCAGTGGTtcatgaatgggagtctatttGTAGCACAGGTAATTCATGGTGATTGATATTGTAAGAAAAATATACAGCTTAACTGATTAGTTTAAAATTCTGAGATTTATTAGAAATATCCATTTAGAAATACTATACAGAAAACAGGaacaatttacattttacaaactgAGAATCTAAAATAATTTGCAGTAAAAGCTTGTGGTTCTGGTGTCATTCTTGGCTGACACGAAATTCCCGGTTGCATTTACGGTTGTCAGCAATCCGGGAGAAAACGTGTCATTGAGGAAAATCACCTTCTGTATCTGACAAACTAAAAATCAGTCATTGCACTCCAATATATCCTGTTCAAAGTGGCAACACAGCATTAAACATAGGCATTACTGGTGTTAGTTTCACTTTCCTTATTAATTTGAGAGAAACAAAACTGTAATTCCACATTGAATGGACCATCTGAATCAGAACGGGTAGAATATAAGCTAAATAGGCTATGGTTTTATACTTGTGGCTCACTCAGCTGGGAGGtgtatttttactgtaaatactttGATATTGTTCTATACTGTTAATaccattgttttaatttttgtttttccttttaagGAACAATAAAGTTTTTAACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71505 lncRNA upstream 330960 27253603 ~ 27255190 (+) True G53487
TU71468 lncRNA upstream 378361 27171624 ~ 27207789 (+) True G53455
TU71469 lncRNA upstream 379516 27138131 ~ 27206634 (+) False G53455
TU71466 lncRNA upstream 383301 27138131 ~ 27202849 (+) False G53455
TU71611 lncRNA downstream 19656 27614985 ~ 27622194 (+) False G53569
TU71612 lncRNA downstream 19656 27614985 ~ 27630584 (+) True G53569
TU71639 lncRNA downstream 43517 27638846 ~ 27641892 (+) False G53586
TU71640 lncRNA downstream 43517 27638846 ~ 27643964 (+) True G53586
TU71642 lncRNA downstream 49427 27644756 ~ 27647329 (+) True G53588
XM_039801908.1 mRNA upstream 168691 27412252 ~ 27417459 (+) True LOC120559859
XM_039800092.1 mRNA upstream 398207 27184494 ~ 27187943 (+) True si:dkey-20d21.12
XM_039800937.1 mRNA upstream 623257 26901475 ~ 26962893 (+) True sema3bl
XM_039800938.1 mRNA upstream 623257 26901475 ~ 26962893 (+) False sema3bl
XM_039801253.1 mRNA upstream 734442 26824237 ~ 26851708 (+) False LOC120559520
XM_039800520.1 mRNA downstream 111167 27706496 ~ 27724463 (+) False si:dkey-72l14.3
XM_039800519.1 mRNA downstream 111176 27706505 ~ 27724463 (+) False si:dkey-72l14.3
XM_039800521.1 mRNA downstream 111177 27706506 ~ 27724455 (+) True si:dkey-72l14.3
XM_039801784.1 mRNA downstream 359070 27954399 ~ 28143801 (+) True bsna
XM_039801785.1 mRNA downstream 359070 27954399 ~ 28143801 (+) False bsna
TU71594 other upstream 168695 27412271 ~ 27417455 (+) False LOC120559859
unassigned_transcript_231 other upstream 207183 27378896 ~ 27378967 (+) True trnam-cau_3
unassigned_transcript_230 other upstream 209856 27376223 ~ 27376294 (+) True trnam-cau_2
TU71506 other upstream 330434 27255374 ~ 27255716 (+) True G53488
XR_005639205.1 other upstream 398207 27184494 ~ 27187943 (+) False si:dkey-20d21.12
unassigned_transcript_232 other downstream 168036 27763365 ~ 27763437 (+) True trnar-ccu_1
unassigned_transcript_233 other downstream 197163 27792492 ~ 27792564 (+) True trnar-ccu_2
TU71748 other downstream 359088 27954417 ~ 27991710 (+) False bsna
XR_005639289.1 other downstream 724321 28319650 ~ 28322779 (+) False casp9
TU71867 other downstream 746593 28341922 ~ 28345916 (+) True G53775

Expression Profile