RNA id: XM_039800454.1


Basic Information

Item Value
RNA id XM_039800454.1
length 2557
RNA type mRNA
GC content 0.43
exon number 5
gene id szrd1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29769852 ~ 29782937 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atGGGGACACAGGAGAACGTGGATATAggtcacattttaaaagATGAGGAGGTCGCCGAAAGTTGGGAGGAAGCTGCTGATAGTAGGgaaatggaaaaacaGTTAGAGGAGAAGCTAAGGATCAGCCAGAAAGAAAAGGAGTCCAGTAATAATTCCTCACAATCTCCATTGAAGACAACCATGGTGATACAGGACGACACTCTACCAGCAGCACCCCCACCTCAGATACGCATTTTGAAGCGGCCTACAAGTAACGGGTCATTGGGCTCACCCTTGAATCAGAATAGGCCTACACCACAGGTCAAGTCTCTGGCCCAGCGTGAAGCAGAATACGCAGAGGCCAGGAAGAGAATACTGGGCAGCGCCTGCCCCGAGGAGACGCCTCAGGACAAACCCAACACTGATAGgGCAGGGCGCAATAACTCTACATTGCCTTCAGAAGACACCCGATCAAACAATCAAACGGTCCGGCAGCCGGCTGGCCCAGACGGCACCCAGGGGTTCCGACAGAACAGATAAGTGGCACCTGGGGGCCACCCAGCCATCGAGGGGAGAGGGAACAAGGGCCACCAGAGAGCAAATACAGCACTGTATTCTTAAAACTTTCTTCCCTCAGTTCCATTATATCGGATGGGCCGGGAGTACAGCCACACTGCTTGCTGCTCAATTCTCCCCATTAGCCGTTTTGTGTAACTGACGGGGAGCGAGGAAGTCCAATGGAAATGTGCTCTCTTCTCTCCCCACTGCAGTCTATTTGACACTGTGATTATGAACATCTTCTGGACTCACTGTGATGATCCCTTTAAGAGACGCCCCACGCctccacctctctcctcctccagtgcCCAGCGGCTTCGTCTCAGGACGCCAGCAAGCCAGAAGCAAAGACTTAAACTAATGATggcagagagagaaggggaagtgCCGGGCCATCGCAAAATAAGATGAGCTGGAACTCGGGCAGCAGCTTCTCCTCAGCAATAATACCAGACATCACTTCTCACACCTTTTTACatacatgtttttaatttttcagaTGTGggctcacattttttttttatccttttgttTTTCTCGCTCATCTTTATCTATACTAGGGATGCTCTGATATCTCTAGAGTACAGATAAACATACTTCACATTATACATACACCACCAAGAACCTGTTCATTAAAACAGTATTTAatattgagattttttttaaactatatttACAGTGTTTATGAAATAGGAAGCATTCACATTTCTTTCACCTTGTTTAGTGTTAAAATGGTCTCAAAATACTATCTTTTGTCCTCACAGTTTAAACACCCACACCATGCACTGCACGTTGTGGTGTCAGGTCCCCAACAGTCAACTCACCACTAAAGCTGCATACTTAACTGGTACCTGCCCGGTAACTGAGCTGTTAGCATTATCTGTGCACCCCTAATATGTAAattgccatttgttttttaaaaactgaGAATAAGGGTCACGTGTCAAGTTGTATATCTGACAAGTTCTGTTTACGGtttgtcttttgtgtttttttttttttaataaggctTTTTAGCGGTCTTCTGTGGACTCttacattatttgtatttaaaagtaaaagcaaaaaaaaacagacgaaTGAAAAGGAGATTGTttttaaggttgttttttttttctgccttttgaGATGTCTGCAGTATTTTAATCAAAATGAACCAAAATCccattttaaaatcaacctgtgtgtatatatagtatatcagTTAATTCAGTAGTCATTATTTGAAGGTGGTTTTGGCAGCAACTCAAGGGAGGGTCAGACGTGGGAATGAATTTACTGCTGTAAGCCTCTCCGTCATATCGCCACCTCGTCAGCGGCGTGCTCGTTTGTTCATGTCCTTCACTGACGCACAGTACGCAGGAACTCAGGTGCAGGGGAGcgagactgaatgaatgaaatggaCTAAGATTGTATTTTTCCAGCAGGTTTGATTGCTTGAGCAGCAAATGTCCGTATTTAAAGCTAGGGCTGGCACTTGGTCAGAAGTTGTGCTTAAGCAGTGAAATTGAACTGAAACGATGTCTATGTCCCAAGAAGAatgaatgccttttttttttttttttttttttggcatcttGGTCACATCAGAAATGGTAACCTCACCCCGTGTGATTGTTCAGTAACTGATGGTTCTCTGCTGAAATGGAACATGGAGACCCAGCTGTAGGGGAACCAGAGCAGTAGTGACTACTTGTATGAGCAGGACCATTGTGCCCAATAGATGCTCTTTAATTGTTAAAACAGAGAAGGGATCTCAATAAAGCCATATTCAGTGGTGCACATCATCAATAATGGTTCTAATGGTTGAATTCAGCTTGTGCCTCCTGTATCACATCTTTACTTCCTGGTTGTTAACTGTAGCTCAAGAAACTGAATATATCTGAGGGAGGAGACAAAATACTAGCAAAATATTTTAGTTCAGGAAATAAAGCAGCAGAGCAGGAGACAATATGGTTTTAGCTGAGCTCTGAGTGGAAACACAAACTGCCTGTAAAtactgatttaataaaatgattTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72307 lncRNA upstream 4042 29761076 ~ 29765810 (+) True G54108
TU72305 lncRNA upstream 9437 29759044 ~ 29760415 (+) True G54107
TU72287 lncRNA upstream 30608 29737041 ~ 29739244 (+) True G54101
TU72280 lncRNA upstream 62785 29703248 ~ 29707067 (+) True G54094
TU72263 lncRNA upstream 83943 29636527 ~ 29685909 (+) False G54079
XR_005639097.1 lncRNA downstream 209190 29992127 ~ 29994409 (+) True LOC120558370
TU72462 lncRNA downstream 311115 30094052 ~ 30103983 (+) True G54221
TU72472 lncRNA downstream 347130 30130067 ~ 30131917 (+) True G54229
TU72474 lncRNA downstream 347130 30130067 ~ 30131917 (+) False G54229
TU72569 lncRNA downstream 701032 30483969 ~ 30486565 (+) False agrn
XM_039800306.1 mRNA upstream 18260 29741558 ~ 29751592 (+) False mmp23ba
XM_039800307.1 mRNA upstream 18260 29741834 ~ 29751592 (+) True mmp23ba
XM_039800308.1 mRNA upstream 18260 29741889 ~ 29751592 (+) False mmp23ba
XM_039800605.1 mRNA upstream 176800 29572007 ~ 29593052 (+) True arhgef19
XM_039801952.1 mRNA upstream 202799 29548744 ~ 29567053 (+) False ano11
XM_039801879.1 mRNA downstream 29226 29812163 ~ 29821637 (+) True LOC120559844
XM_039799647.1 mRNA downstream 57267 29840204 ~ 29846246 (+) True otud3
XM_039799648.1 mRNA downstream 58667 29841604 ~ 29846246 (+) False otud3
XM_039799650.1 mRNA downstream 71033 29853970 ~ 29891523 (+) True trim33
XM_039799651.1 mRNA downstream 71033 29853970 ~ 29891523 (+) False trim33
TU72298 other upstream 11842 29752446 ~ 29758010 (+) True G54103
TU72299 other upstream 15605 29752446 ~ 29754247 (+) False G54103
TU72220 other upstream 202079 29560113 ~ 29567773 (+) False ano11
TU72074 other upstream 446648 29315883 ~ 29323204 (+) False nadka
TU72069 other upstream 455105 29296604 ~ 29314747 (+) False nadka
unassigned_transcript_234 other downstream 749163 30532100 ~ 30532191 (+) True trnar-ucu_12
TU72674 other downstream 906715 30689652 ~ 30690404 (+) True G54383
XR_005639323.1 other downstream 1015256 30798193 ~ 30825140 (+) False LOC120559580
TU72899 other downstream 1673586 31456523 ~ 31463283 (+) False hdac7a
TU72942 other downstream 1739384 31522321 ~ 31525714 (+) True G54596

Expression Profile