RNA id: XM_039799253.1


Basic Information

Item Value
RNA id XM_039799253.1
length 4314
RNA type mRNA
GC content 0.50
exon number 19
gene id fgd
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16225552 ~ 16283799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACAGAGGAGAGAGTTCTGTTactggagagggaggagaaagaaCTACATGGAGGACTACAGTTCGCTTATTCTACACTAAAAAAGTACCCGGGCAAAGTCTCTCGCGTCCGTTAAGAAACCATGAAGCgtccttagtgtgtgtgtgtgctttttttattatttttttaaatcgaacAGGAAAAGGGGGGCTGTGAAGTGGACGCGCTCCTCTGAGTTTAGTCCCCCCGTACGCTGGAGCCGCTGCTGTTGCCAGTTTCTCCAAGAAAAGGACGGATTCAGCAGAGAAAGACAGGAGAAGAACTTTGTGCAAGATGCAGGAGGTTTCAGCTACTGACCTCCCTGCCTCCTCCCTGCAGTACCAGTGCGGATCAGTGGACTACCTGTGTTCTCCACGGCTGGTAAAGAAAGGTCCGACCCCCAGACCATGTCACGACAGGCCTGCCATCAAACCCCGGCCCCAGCCCTCCACCTCACCCAGACCGCCAACCGCACAGAAACCTCAAGTGCCCCCTAAACCTTCGCACCTGCTCGCCCTTGGGCAAGACAAGAAACCTAAGAGGATCCCTCCACCGCCATCGAGGCCTCTGCCAGCTCCCCCTCCTCCGCCTAAACCAAAGCCCAGTATAACCCCTCCTGGCTTGGGAGCACAGCCACAGAAAGAGGCCCAGAAAGTGGGGCTGCTCATCGAGAGGTTCGAGAATTCAAGGGTCCCTATCCTGGGGGTGCTCCCGCGGTCCCAGCTGCACCTGTGTCTGAGAATGGACACTGCGTCTGACATCACTTCCTCCTGTGGCCAGGACACCACGGCGAAGGTTGCAGGAGACTCCTCCCCTGCGGACAAATTTGCACTTGGCACCTCCGAACGGACTGACGAGGTGTCGGAACTTTCCTGTCTGGCTTCTGTTCACATCGATGGTTCGGATGAGGCACCATTGGACGACTGTGACCTCACACACGGCGTTGGTTGCCTTGATGACGTGGAGCGGGAGGATGGCTCCTCCCACGAGCTCCTGGACAATCCGGACTCCTCGGAGCAGAACGGGAAAATTCCTAACCGGGACAGTGGCATCGACAGCCCGTCATGCGCTGCAGAGGGGGAGGTGTTCCCCAACGAAGACGCCATCGACGAGGAGGATCATTACGACAGTGTCACTGAAACGGAGAGTGTGTCCTGCTGCGTTACCCTAGACAACAAGCGAGACTCAACGCAGGATGAGGACAGTGACTTGGATGAGGGGAGCAGTGGAGAAATACACTCtttgacagacacacagactggGTATctgacagatgcacacacagaggcacacaaaTGCTCAGAGACTCAGAAGCTCCTGAACATCGCCAAAGAGCTTCTCCAGACAGAAGAGGCCTACGTCAAAAGACTCAACCTTCTCGACCAGGTATTTTGCACTAAGCTCACAGAGGCTGGAATCCCTCAGGATGTGATTACAGGGATCTTCTCCAACATCTCCTCCATCTACTGCTTCCACGACAAGTTCCTGCTGCCTGAGCTCCAGACACGCATTACTGGAGAATGGGACTCTAACCCTCGTATTGGAGACATCCTCCAGAAACTGGCTCCGTTCATGAAGATGTACGGGGAGTATGTGAAGAACTTTGACCGAGCCATGGACTTGGTCAACACCTGGACACAGCGGTCTTCACAGTTCAAGAGTGTCGTCCAGAATATACAGAAACAGGATGTGTGCGGGAACCTGACGTTGCAGCACCACATGCTGGAGCCGGTCCAAAGGATTCCTCGCTATGAGCTGTTGCTCAAAGACTACCTGAAGAAGCTGCCTGATGACACTCTGGACCGAAAAGACGCAGAAAAGGCACTGGAGCTCATCTCTACTGCAGCTAACCATTCCAATGCAGCAATCAGGAAAATGGAGAAGATGCACAAGCTGCTGGAGGTTTACGAGAGGcttggaggagaggaggacataGTTAACCCAGCCAATGAGCTCATCAAAGAAGGACATATCAAGAAGATGTCGGCCAAAAATGGAACAGCACAAGACCGATACCTCTACTTGTTCAACAATATGGTGCTATACTGCGTGCCTAAACTCAGACTGATGGGACAGAAGTTCAGTGTCAGAGAGCGGATTGATATCGCTGGCATGGAGGTGCAGGAGAATGTGAAGCAGAACCTTCCACACACGTTTGCCATTATCGGCAAGCAGCGTTCACTGGAGCTGCAAGCAAGGACAGCTGAGGAAAAGGAAGATTGGATTCAGGTGATCCTGGCCACTATCGAACGTCACATACAAAACAGCGAAACATTCAATAAAGCGTTCAACAGCTCCTTCTCCCGGGAAGATGACCACCCTCCTGAGTCACCGGGTCCCTGGTTCAACACATCCATTGACTCAGATGGAATGCATGAAAGGAAGAGTTCCAGGAAAAAGGACAAAGAGAAACAAACGTGTAAAGGCTGCAACGAGAGCTTCAACTTCACCAAGCGCAAACACCACTGCAAGTCCTGTGGAGCGGCCATCTGTGCAAAGTGTTCAAAGACCTTGGACAACAAAACAAGCAGAGTGTGCCCGGAGTGTTTCGAAGCCAGCCTCAGCCTGGAGACTCTCTGCATTagtgaacagaaaaggaaaGCTGCGCCTGAGAGACAGACCTCTCTAATGGGGGAAAACTGCCTGCTATGTGGCCACCTTCAAGTGCAGGAGAAAGGGAAGAGCTGGTCCAAGATGTGGGTGGCTGTCACCAAGGCTGAGCCACTGGTGCTGTACCTGCAGAGCAGTGGACAGGACTCCAAGGGGGCGCGGGTGGTGCCTCTCCCTGGGTTCGAAGTGAGCGTGGTACCGCCATCGGGAAGCGAGAAGTCGGAGATCAAACACCTGCTCCGGCTCAGTCACACCCAGCAAACTTTGCTCTTAAGTGCCCAAGATGCAGAACTTCAGGCCAAGTGGGTGGACGTCCTCTCCAAAGCTGCCCGCAGAGAAACGCCCACAGATGCATCTGACTGAACACAGGAAGAGCCAGTAGTGGCCATGTTGGAGCCACAGGActccctccatctttctcttGTGTATAGAGCACACATTACTTGAATTCACTTTACCTTGgcactttttgtttgttttagtttttttcccccctcttttGAAAGGACCACCCAATCCTTCCTATGCCACTTCAATCTTCTCATCATGACCACACAGCTACGTCTTCTTCTGTCTTTATCTTCTtgtctctctcaaacacagaaAAATGACTATGCTATCAAGCCACACCGCCACTGTATGTATACGTGTGGTTAGGATATTATAGTGTTTTCAAACGCTGGGGAggactaaatgttttatttgtaatatAGCTGAAGAAAGTTCCTGTATGAGTTTTTTCTTAAGATGAAATTTCTAGTACATCATGCGACTGTGTTGTGAAGCATTAAATCTTGCGTGTGTCTTTCTATTTGTGCgaaagtatgtatgtgtgtgtttgagtgtgagtCCCTTCCCATGTTTATTAAGTATTGAATGTTAGTGTAAGAAACCTGCGCCACCTCTCTGTTCTCTTCACTCCTGCTGTGGACACAGTGGTAGTTCAGTgggtattgtacagtatgtatactATAGTGCGATGTaagaaagcaaagaaacaaaagacattttaaCTTAAAAAGACACAGAGATGTGTTCGCTTGTGGCTGGCCACCTGATGCTCCCACTGTCAGTTCCCACCTTACAGACCTTGTCTTCATACTTCTCTCATCTTTAAAGGCAATAACTCCCTCCCGAAATTGTCTTGACCACTCTGTCATGATTGCGACTCATCCTGTTGAGAGTCCGCAGCCAGAGTGGGATCAAGTTGCCTCTATTCTGATCCTGCACTGCAGGTTCAGTCCCTCAATATCTCCACTTGTACACATGCTTAATAAATAATTTCCGTatacttctctctctttcttagcATTGCAACCATCTGCCTGCTTCTCTCCCTTTGGTGATGTGATGGAAAccaagtactgtactgtaaaactGTTAATTCTGCCTTGACCCTGTACCCTGCTCCTATCAGCCAGCAGCCTTTAAGCAaaagtagcaaaaaaaaaaccttgtcaTTGGATCTCTTTGTGCATGTAAACTCACTCATATTTATGTACTGTGCTCTGAAATCTTGCCCCTATACTATACCCCCTTTTATGCTCCAGAACTCATTCTTGTCGTACTGTAAGTGAGCAGCAGTAAGTGTTTTAAACATGGATTGTGCACAGTGGAAAAGCAGTCAAGCATATCATCAATAAACAGACATTGTGATTCATTGAGTACCACGCTGTCCAACAAGA

Function

GO: NA

KEGG:

id description
K05722 FGD3; FYVE, RhoGEF and PH domain containing 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66873 lncRNA upstream 256221 15894025 ~ 15969331 (+) False slc6a1a
TU66874 lncRNA upstream 256221 15965023 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA upstream 274380 15949249 ~ 15951172 (+) True G50077
TU66853 lncRNA upstream 358183 15776217 ~ 15867369 (+) False G50045
TU67072 lncRNA downstream 1758 16285557 ~ 16285759 (+) True G50218
TU67076 lncRNA downstream 21550 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA downstream 21550 16305349 ~ 16311017 (+) False LOC120559121
TU67086 lncRNA downstream 21550 16305349 ~ 16311017 (+) True LOC120559121
TU67104 lncRNA downstream 81221 16365020 ~ 16379644 (+) False LOC120559119
XM_039799254.1 mRNA upstream 5294 16176577 ~ 16220258 (+) True LOC120558327
XM_039799256.1 mRNA upstream 5294 16176577 ~ 16220258 (+) False LOC120558327
XM_039801419.1 mRNA upstream 51951 16163048 ~ 16173601 (+) True fbxw12
XM_039801420.1 mRNA upstream 58956 16162697 ~ 16166596 (+) False fbxw12
XM_039801833.1 mRNA upstream 88739 16135340 ~ 16136813 (+) True LOC120559808
XM_039800588.1 mRNA downstream 14132 16297931 ~ 16304967 (+) True LOC120559120
XM_039800592.1 mRNA downstream 20513 16304312 ~ 16310896 (+) False LOC120559121
XM_039800590.1 mRNA downstream 21430 16305229 ~ 16310896 (+) False LOC120559121
XM_039800591.1 mRNA downstream 21433 16305232 ~ 16310896 (+) False LOC120559121
XM_039800576.1 mRNA downstream 39022 16322821 ~ 16379645 (+) True LOC120559119
TU66854 other upstream 358183 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 426595 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 1212585 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1371925 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1373083 14852396 ~ 14852469 (+) True LOC120559927
TU67106 other downstream 91509 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 91509 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 96245 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 115398 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 694099 16977898 ~ 16994701 (+) True eif2d

Expression Profile