RNA id: XM_039799283.1


Basic Information

Item Value
RNA id XM_039799283.1
length 1920
RNA type mRNA
GC content 0.43
exon number 13
gene id ssuh2rs1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17246342 ~ 17251285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGGGGGAGCGCTTTCGGTATCGTTACTTCTCTAAATTTATGAGCGCTTTAAAGACCATAGCGTGAGCCCTAAAGCTGAACCAAAGACACAAAAATTAAAGTTTTATtagctacttttttttttttttttacagtctgaaGAAAAGGTAGGCTTAATTGCTGACTGACAAGTTTCTGGAAACGGATATGTGTAtgacagacagaagacagaagACGATGATCTGATTTTTATCACATGATTGCTTGTGATTAGAGCCTACGTGGATTAGAGCACGTATGAATAGTTGTATTTCGCTATTTGGTTGTTTACCAGCGCTTTGAAATGGAGTCTCAGCCCGTATCAGGCCACCAGAACAGAACCTACGGAACGGCCAATCCCGGTTACATACCAGCGTCTGCGGGCAGACCCGCAATGTTCGCCCCACCCGCAGCTGAGTTCCAGGGACCCAGCGCTCCTCCAGCCGGCATGTTTGATAACATGCCTGGCTACGAAGGAACCATGGCAGGCGGAGGAGGAGGATTTCTGCCCCCTCCGATACCTGCTTTTCCAGTTCCTCAGCCTCAACCTGGACCCGAACAACCACACTGGAATATCCCATCTATAACTGAAGATACTGCCCGGAAAGCGTTTGTCCAGTTTGCCTCCAGCAAGTGCTGTTATAGTGCAGCACCAGCAAAGGATGGTGTGATCACCAGTATGGATGCATTCAATACTTACAGGTACCGCCTGGAAACCTTCACTGAATCAAGATCTACAGAGTGGAGTCACGAGCCATACAATGGCCAGCCAGTGGATGCCTTAGCCCAACCACCTCCAGGCCCCTGGGATGTTCCTGCTCAAGCTACCAACTTTTTTGTGGATAGCAAACAGATTATGAAGGTTCCCTACACATCGTCCATGAAGGCCTGCCACGTTTGTGTGGGAATGGGTCGAAAACCTTGCAAAGACTGTGCCGGTGCTGGTAATAAAGTTTGTTGGGTCTGCAATGGATCTGGGTACCGCATGAGAAATGATCAATGCCACCACTGCAGTGGCAGAGGAAGGGAAAATTGCATCCACTGTCACGGGCAAGGATCGAAGCAATGTGAAACATGTCATGGAAAACAACAGCTTCTGGTCTACATCAACCTCACTGTGAAATGGACCAACAACTCTGATAACTATGTTGTAGAACAGTCAAGTGGACTGCAGGTGCACAACCTCAGCAACGTGTCTGGCAAGGAGCTTTTCAGGGACTCTCAGTACATGGTATACCCAGTGATGGGCTTCCCAGACCCTACAGTGGTGAATGCTGCACAGCGCCTTGTCAGTGAACACCAGGGCAAGTTCTCCCAGACCTCACGCATTCTACAACAGCGTCAAACCATAGAGCTGATCCCCATCACCAAGGTTACCTACTTGTGGAAAGGGAAATCACACGTTTACTTTGTTTACGGGAATGAGTTCAAAGTTAGTGCAGATGACTATCCTGCTACCTGTTGCTGTTCTGTGATGTAATTGCAATAGCTGCTTACTGGGCAgttcccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaagatAACTAATGTTTGggaaatcatttttattgttttgtgccATTTCTATGCATGCCACACAGAAAATAATTGCTTATTGACACTGTATAAACCATAATCCTACTATATTCCCTGAAGTCGATGcttttacatacatacaacagtGATTTTTTTGTAACATGTATTTGCACCTAATCAGTTTGCTCTCATGgcaaaataatttagttttatgTGAATGCAAGTAATCATTAAATGTGAAGAATTTTGTGAGACAAACATATGTAATATTAGCTTTGCAGTATTTCATTAATTTTAATAAATGGTATTTCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67540 lncRNA upstream 82680 17163179 ~ 17163665 (+) True G50518
TU67530 lncRNA upstream 94432 17151182 ~ 17151913 (+) True G50509
TU67525 lncRNA upstream 110855 17134688 ~ 17135490 (+) True G50505
TU67495 lncRNA upstream 141381 17098622 ~ 17104964 (+) True G50493
TU67374 lncRNA upstream 416465 16826880 ~ 16829880 (+) True G50410
TU67785 lncRNA downstream 417553 17668838 ~ 17670631 (+) True G50700
TU67813 lncRNA downstream 499000 17750285 ~ 17776236 (+) True G50725
TU67815 lncRNA downstream 525117 17776402 ~ 17835766 (+) True G50727
TU67848 lncRNA downstream 692427 17943712 ~ 17944815 (+) True G50752
TU67849 lncRNA downstream 705913 17957198 ~ 17957644 (+) True G50753
XM_039800426.1 mRNA upstream 41722 17193960 ~ 17204623 (+) True LOC120559003
XM_039800134.1 mRNA upstream 52751 17188162 ~ 17193594 (+) True LOC120558844
XM_039801476.1 mRNA upstream 71975 17166679 ~ 17174370 (+) True abtb1
XM_039800942.1 mRNA upstream 96280 17141704 ~ 17150065 (+) True LOC120559311
XM_039799282.1 mRNA downstream 65 17251350 ~ 17269432 (+) True LOC120558338
XM_039801324.1 mRNA downstream 21668 17272953 ~ 17323030 (+) False LOC120559551
XM_039801322.1 mRNA downstream 21669 17272954 ~ 17323030 (+) True LOC120559551
XM_039801323.1 mRNA downstream 21669 17272954 ~ 17323030 (+) False LOC120559551
XM_039801326.1 mRNA downstream 21669 17272954 ~ 17323030 (+) False LOC120559551
TU67547 other upstream 49172 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 251644 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 840740 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 852113 16380044 ~ 16394232 (+) False brpf1
TU67110 other upstream 868856 16375308 ~ 16377489 (+) False LOC120559119
TU67812 other downstream 490175 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1430858 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1478195 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 2205206 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 2516367 19767652 ~ 19768564 (+) False LOC120558920

Expression Profile