RNA id: XM_039799317.1


Basic Information

Item Value
RNA id XM_039799317.1
length 1810
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120558357
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13474266 ~ 13499442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATTTGTTTCTTAGTGCTCGCTGAAGGGGGGACTCAGAGAGAGCCGCTGCTCACAGGCTGCCTCTCACTGGAAGGATGCAGACGCTGAAAGAAGAGCTTCTACAACAGTTAATTAAGGAGCACTCTGCACGTGCCTATAAATGCGAAGGGGCAAATGAATTCAGTGTCAGTGGGAGCAGTTCCTCAAGGGGAAGCTGTGACATTTCAAAGGTGGAATTGAAAGAGCTGTAAATCTGTTTCCTGACGCCGGCTTGACGGTCATTTCTGAATCACTGGACTGTTGCTATCAAAGTGTGGAGCAGGGAGGCAGAGTCAGTGGAGTTCTCTCCTCAAGCTAAATTCAGTTATTGGATGGTATCAATATGAGCAGCATTATGGATGGATTTATGTCATTCTGTTGAGATATTTATACACTCTTTGTTGGATTGCTCAGATGTGTCCTGTCATGTCCTGGCTGCTCTGCCTGTACCTCTGGGTCAGCGTGACTGCCATTCAGCTGTGTCAGGCCACTTTCTACGACACCATCCAACAGCATCATGGGACGAGGCCTGGACGAACCACCATCCACATGATTGaGGGGGGCACATGTGAAGTAGTTGCTGCTCACCGATGCTGTAATAAGAATCGTATTGAGGAGCGGTCACAGACGGTCAAGTGTTCTTGTCTGCCGGGGAAGGTGGCTGGAACCACCAGAAACAGACCTTCGTGTGTCGACGCATCCATAGTAATTGGGAAGTGGTGGTGTGAGATGGAGCCTTGCCTGGAGGGGGAGGAATGCAAGACGCTCCCTGACAACTCAGGCTGGATGTGTTACGCCGGCAACAAGATCAAAACCACAAGGAACACTCAGCCATACACAACATCTACATATTAACACTTTGCTGAAAGGATGCAAGGAACGCCTCTGGTGGAAAAGGTTAATCTGCAGACTGTCACAGGACCAATTATCACAAAGACAATGAACCTATTGTTGCTTTATGAAATGTGAACACTTCTCAGATTAAAGTGTAAAAACATGTAGAATACATCAACCACATCCTGCTCAAGGCTACTGAAAATACTGACACTTCAAGAAGCCCGCGGGGAACTTCATCATAACCTTGTAATGAATATATTTTCCATCTTTTCTTTCCGACTTTGAGATGGAACGTGAATGTCTGTGCATTTGGATTAATCTGGAGAGCGTCTGACGTCCTTGCTGATACATCGTGAGACAAATGTTCAATACAAAGCGCCaaaaaggagagaaatacaACAAAGGACATGGGATGAGCAAGTACAGTAGTTGACAGCcctcaggtttttattttttatttttttaatattgcaaGAGGAAAAGAAATATTGTACATACGTTGTTTGTCCTTCCTTGTGTACATGAACTTTATCTATGGTGGTGGTGAAAAATTATCATTCGAGTCCCTGAATGCGGTCTTGATCTTCCCTCTTGTTACCCTTAAAACCCAACACAGCCAAAGTTTGATGATGTAATGTAAAGATAAAACAGATGCATTGTgagggagatgtttttacaaaaTACAGCTTGTGTGTCTCAACACTGtacattttaccattttgtttgtttggtacTTGGGAGCCTATGATCACCTCTTCAATGGCTTTACCTGTCAAACTTGGTGACGTGTCAGCTACCCTGAAACCGATTGATTCACCAAAAATGTGATACCGGTAGGGTTTTCGAGACTTGAAATGCCTTATTTGTGTCAAATCATTCAAATGATGATATTGTACAGATGAAGCCATCTATTGATATGTGCTGAAATTTCATTAAAGTCATTGTTCCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66127 lncRNA upstream 27531 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 41049 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 95857 13365731 ~ 13378409 (+) True G49474
TU66077 lncRNA upstream 105947 13365731 ~ 13368319 (+) False G49474
TU66038 lncRNA upstream 166694 13306840 ~ 13307572 (+) True G49461
TU66203 lncRNA downstream 117435 13616877 ~ 13641874 (+) True G49562
TU66214 lncRNA downstream 137424 13636866 ~ 13639093 (+) True G49572
TU66235 lncRNA downstream 164445 13663887 ~ 13724990 (+) False LOC120558697
TU66236 lncRNA downstream 225646 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 225646 13725088 ~ 13732249 (+) False G49585
XM_039800980.1 mRNA upstream 22359 13448308 ~ 13451907 (+) True slc16a7
XM_039801794.1 mRNA upstream 181954 13284381 ~ 13292312 (+) True pm20d1.2
XM_039802005.1 mRNA upstream 190015 13278618 ~ 13284251 (+) False lemd1
XM_039800757.1 mRNA downstream 27866 13527308 ~ 13531488 (+) True LOC120559207
XM_039801319.1 mRNA downstream 65183 13564625 ~ 13605435 (+) False LOC120559547
XM_039801315.1 mRNA downstream 66123 13565565 ~ 13605435 (+) True LOC120559547
XM_039801316.1 mRNA downstream 66124 13565566 ~ 13605435 (+) False LOC120559547
XM_039801318.1 mRNA downstream 80246 13579688 ~ 13605435 (+) False LOC120559547
XR_005639216.1 other upstream 589979 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 815958 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1015827 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1250628 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 1263857 12182209 ~ 12210409 (+) False nol4la
TU66161 other downstream 32948 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 613608 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 613826 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 613826 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1065425 14564867 ~ 14567456 (+) True G49773

Expression Profile