RNA id: XM_039799353.1


Basic Information

Item Value
RNA id XM_039799353.1
length 2163
RNA type mRNA
GC content 0.44
exon number 13
gene id spo11
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15833183 ~ 15840777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCGTGTATACATACAGTCCTGTGTAACAATAGATCATGGGATCCTGTGAAGCAGGGCTGTTTACAGAAATTGACAAGCTCCGTGCTGAACTGGTAAACAATGTCGAAGTCATGCCAGGCTGCCAGCGCGATGAAGAAGAAATTACCTAcagggAAATTTTGAGCCGCATTGAAAACGTAATCCTAGGAATAGTGACAAGTCTTTCCAAAGATGAGAACCCTGTCCTGGCACTGCCCAACAGATCCAGCTGGGCCAACGTCAGTTTTGACAGTGCCATCGGGCTTCAAATGAATTCAGGAAGTTCTGTCACCAGCATTAGGAGCGACAGTCCGTCGTCTGTTCGTAAATTTGCGCAAATTCTCAAGATCTTCTTGGTCATCTACAAACTTGTGCAGAGCAACTCCTATGCGACCAAAAGAGACATCTATTACAACAATACACAGCTGTTTGGTTCACAAAAAACGGTTGATAGTATAGTGGATGATATTTCCTGCATGCTAAAGGTTCCTCGCAGATCACTACAtgtgATGGCCACGTCCAAGGGATTAATCTCGGGTGATCTGTGTTATCTGGAGGAGGACGGCACAAGGGTTGACTGCCGCTCCGGCTCTGCTgctgtTGCAGTTTCATCGAACATTGGTGGGATTAGAAATATTGTGTCATCTGCAAAGTTTGTCATGATAGTTGAGAAGGACGCAACGTTTCAGAGACTACTGGATGACGACTTCTGTGAAAAGCTGTCTCCTTGCATCATAATTACgGGTAAAGGCGTGCCAGATGTGAACAGCAGGTTGATGGTGAGAAAGCTTTGGGACACGCTGCACATCCCCATCTTCGCACTGGTGGATGCTGACCCTCACGGAATTGAGATCATGTGTATCTACAAGTACGGATCAGTGgcCATGTCGTTTGAGGCCCACAATCTGACCGTCCCCAGCGTTATGTGGCTAGGCCTCCTCCCCTCTGACCTCCAGAGGTTGCGGGTTCCCGAGGATGCACTGATCCCCCTCACAAAGAGAGATGAAAACAAACTTAGCAGCCTCCTTAAAAGGCCATACCTAACCAGCCAACCTGACTGGCAGAAAGAGATGGAACTGATGCAGCAGACTCAGGTCAAGGCTGAAATCCAGTCCCTAGCAGCCATAGCTCCTGATTTCCTCACCAACATCTACCTGCCCAATAAGCTGCGTTACGGTGGCTGGGTCTGAGCCCAATGCTGCCtctcaatggaaaaacaagtgAACTGCTAAAACAGGTTGCAAAACTAAAGAAAGATCGTCCATGTAACTTTCCTGCCTAACCTTGTCAGACAGATTCAAATCTTAAGTTGGTCTGTAATGTTTGCATATTTATTAGAGACTATGTCTGTTTATCTTTAATACTAAACACTAACTATCTCCTATCATTAAAGCCCTGTAATCCCATTGACAAGTCAGAGCATGTTGTTGATCTTTATATTCTTGTTGGCCTTGTTTGTATTCCCTAAATGTTTGGACCTTGCAAAGTCACTAAAGTTTGTTTCATTCATGGAGTTAATTATTCTACCTTGCATGCTTTACAGCCACTGAGCACCACTGTGCTGGTGCAAAGACTGCAAGTGAGCAGATGATGATGATTCAGTGGTTTGGAACTGGAGTATCTGTGAGGCTGTTCATTCATTAATGCGCAACATATAAAGGCTCACGTTGCTGTTCTTTGTGTAATCAGTTCTCCAGCAGGTGCAGACAGTGTTCATTAAATGGAAGAATTGGGCACTATTTTAAGCTTTATCAGGGAAGAACGAGGTAAAGACGAGTAGAGCCATTCAGGAGGCATATGCATCACTGTTAGGCTAGACAGCCGGTTTCAAGGCTTATCTTTAGAGAAGAGGGCCATTTTATGTGTGCTTCctctttatgtatttatttacttcaTTTAACCTATGTATATAAAAACTAGGGATAGGCTGATTAtcgggctgttttttttttggcagtttgcagatcatctgtatcagcgttttatttgcctgataaccgataaagttataTAATTAAAATATGCGCTACTTTGGCGCCGCTacagctctgtctgtccctctgtttcGCTTTCACTCCCCACTGAGTCAGACTTAATGttccgcccacaacactatctgactatcttttactgtatattatg

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66832 lncRNA upstream 127715 15705096 ~ 15705468 (+) True G50029
TU66817 lncRNA upstream 163639 15667249 ~ 15669544 (+) True G50017
TU66818 lncRNA upstream 163639 15667249 ~ 15669544 (+) False G50017
TU66810 lncRNA upstream 193882 15637483 ~ 15639301 (+) True G50011
TU66813 lncRNA upstream 410575 15422319 ~ 15422608 (+) True G50014
TU66852 lncRNA downstream 22031 15862808 ~ 15867369 (+) True G50045
TU66873 lncRNA downstream 53248 15894025 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA downstream 108472 15949249 ~ 15951172 (+) True G50077
TU66874 lncRNA downstream 124246 15965023 ~ 15969331 (+) False slc6a1a
TU67072 lncRNA downstream 444780 16285557 ~ 16285759 (+) True G50218
XM_039801220.1 mRNA upstream 41126 15772217 ~ 15792057 (+) False zmp:0000000926
XM_039801221.1 mRNA upstream 41126 15784433 ~ 15792057 (+) True zmp:0000000926
XM_039799250.1 mRNA upstream 132807 15697279 ~ 15700376 (+) True mtg2
XM_039801995.1 mRNA upstream 136305 15687325 ~ 15696878 (+) True LOC120559909
XM_039801996.1 mRNA upstream 136305 15687325 ~ 15696878 (+) False LOC120559909
XM_039799422.1 mRNA downstream 1166 15841943 ~ 15847795 (+) False LOC120558427
XM_039799421.1 mRNA downstream 1970 15842747 ~ 15847795 (+) True LOC120558427
XM_039799423.1 mRNA downstream 2154 15842931 ~ 15847795 (+) False LOC120558427
XM_039801853.1 mRNA downstream 9875 15850652 ~ 15855043 (+) True LOC120559823
XM_039801455.1 mRNA downstream 45213 15885990 ~ 15895825 (+) True slc6a1a
XR_005639300.1 other upstream 34226 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 820216 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 979556 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 980714 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 1255611 14574542 ~ 14577572 (+) True G49776
TU66854 other downstream 23135 15863912 ~ 15867369 (+) False G50045
TU67106 other downstream 534531 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 534531 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 539267 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 558420 16399197 ~ 16405605 (+) False LOC120559923

Expression Profile