RNA id: XM_039799437.1


Basic Information

Item Value
RNA id XM_039799437.1
length 3825
RNA type mRNA
GC content 0.43
exon number 7
gene id tspy
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12697896 ~ 12704089 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTACCGTAACCAATCAGAGGATTGTTTTTCTGGCACGTCGGTGCACGGATAGTAAGCTAACGGATATTGCAAACATAAACTAATATAAAGAGCGCGTGTTCTTGCTAAAGGCTGTATAGCACGGGAAGATTTCTTTAATATGACCGAGTATTTCTTATTGAACTTGTATTCGTGAAAATGTGGTGCGGCCATCATTGCGAGGACACACGAATTGGGTAACGtgagctaactaacgttagctgtagcctgctaaTTTTTAACGTTCCGCAAGGCCGCGGAGAAATACAAGAGCTGCTTCCTGTTCTTGCTCCATTGAGAATGTAGGTTACATTACGGTCCGATATACAACATCGCAGCGGTTATCCAAGGAGCAAGTTCAGTTGTGTAATCGATTGCATTTAagtttgttttagttgtgcttGCGGGCTACCTAGCTTGTTAGCTatttggctagctagctagcatgaGTGAACTGACGGGCTGCAAACAGTCCGCTGACTCTGCATCGAGGAAACGGTGTCCATCACCCGACCGCGATGAAAGCGCCACGATCCCCTGCAAGTCCACAAAAGTAAGTGACGCAACAAATGAAGCCGGGGTCACTTCGGAAAACTGCAAAAACAGTGACGCTGAGAGTAAAGAAATAGCCGCCAGCGAGGGCCAGTCAAAAGATAACGTTAGTGAGGGGAAACCAGCTGCTGTGCAAGCGGATCAGGGTTCAGAAAGCACGGATCGCACCAGTGCACTGCCTGTCAACAACTCCAATGCTGACGCTCACGATGCCAGCAACACAGAAAAACCACAGTCCTCAGATGCACATGGATCTGCTGACGCAAAGGCAGATACAGAGAAGACAGCAGGAATAAAGCAGCGTCCCTCAGCTTCTCTGGACCAGACCGACTCAGCAGCCATAGCAGCTGCTGAAGCACTTGCCAGTCTCACAGGAGGAGACGGGGAAGACAGTCAAGAGACTCCTTGCTCATCTGAAAAGGCTAACGTTAAACAGGTGAAACAGGGGAGCAAATTCAAACAACGTGGGGGCCACCAGTCCTCAAGAACGGGCTTTAAAACGCAGGCAGCTGCTGCAGATAGCTCCACATCTGTGCACAGTACTGACAGAGAAGATGCAGATGAGATGCCAGAAGCAGATGAAGGTGATGAATCCATATCTGGATCTTCCTCCACTCCAAGCTCCTCTTTCCCGTCAGACAATGAGGACAATGATGATGGGGAGTGTGCCATTGTGTCAGTTAAGATGGCCCCAGAGATGAGACAGTCGGTGGCTCTTCTGGCGCAGGTACAGATGAGACTGGAAGCTCTTGAGAAGAAAAACGCCCGGCTTCACCAACGGCTGGAGCTGAAGATCAGTCGTCAGCGGCGCCCACATCTGGATCAGCGCAGCTCCATCACAAAAACTATTCCTGGCTTCTGGGTGACAGCTCTGTTGAACCATCCTCATCTCTCAGCTCACATTGACGAGACTGATGAAGATGCTCTGAGTTACATGACTGATCTTGAGattgaGTCCTTTAAGAATAATAAACTGGGCTACAGGATCCGCTTCCACTTCAGACGGAACCCGTACTTCCAGAACAACATTATCATGAAGGAGCTGCACCTTGGGATGGGAGGATCGCCCATGTCCTTCTCCAACCCCATCCTGTGGCATCGTGGACAGAACCTGACGGCCCACAGCGAACCCAGGAAGTCGTCGCGTGGGGTCTACCAGACCTTTTTTAGCTGGTTCAGTGACCATAGCAACCCAGGACAAGATGATGTAGCACAGATACTTAAGGACGACCTGTACAGAGACCCTCTGAGATACTACCTCACTCCACTCTGGGAACCCAGGGAGAACGGCAGTGGTGGCAGCGGGGCCAGAGCAGCTGACAACGGTAATGGAGGCGAGTGTGTAGTAATCTCCGACTCAGACGATGAACCCGGTGAGGAAGCTGGTCAGGCGGAACAAGGCCACAGCAGGGAGGAGGAAGACgaggatgatgaagaggaggaggaggaggaagaagaagaagaagaagaggaggaggaggagagggggccAAGCGCTGGCTCTGATGACAGtgagcaggaagaggaggaggaggcctgAAGAGGTTTATGTCAAAGAAGAAGACGAGTCCTCAAGGGACCAGAGACcaagaagatgaagaaaaggCCTAGGTTGACGAAGAGTACCAGAGCAATGTCATTTTTATGCACATAATatcagtttttgttgttttataccTAAAATACAAAGGAGCATTTTAAATCAGggttaaatgtaataataaagtCAAGGTGGCATGGTTTCCCCTCAATTTTATACAGTCGGGACTGTGTATTCTGATTCACtttttgctaaatgttttttcttttctttttctaaaccagTTCTTGGGCATATTATGCCAGTCACTTCATACAAGTAGTGTTTTCTTCTATTTAGTGAGGAACATTGTACAACAGCCTGCACACATGTAGGTGAGATCAGGATTGCCGCTACTTGTTGGCATAACATTTTGCAATGCAAAATCTTCAAATTAATGTAGAAACCTTCAGTAGCGTTATTTTAGAGCTACAAAGATTGATCGATTCAATTattcgccaactattttgataatcgattaaatcggtttgagtcatctTTTTATTAAAAGGTAAACATTTTATTCTAGCTTATAGGTTATTCACGCCTCTGTGACAATAAACTGAAAATCTTTTGAGTTGTGAACAAAACTAGACATTTGCAGCCgttatcttgggctttggaaaacgcTGATCAGCATTTTCTAGACCAATGAgctaatcgactatgaaaaataatcgttagttgcagccctacattaTTACGTGATTATTTCAAGGCAAAGTTTTGGCTGTTTGTAGAAttgacaagacaaaaaaaatgtcaagttAAATTGATAATTATAATGACAGTACATTTCAGATGCACAGTACTGAACCAAAATCCGCTCTCAGGGATGATCATGGTTGTAGTTTTATTGGAAGAACCTTACTGATCTTCAGACATTTACACTCTGGTTATGGTTGGCTGTGTATAAGGAAACGTGTACTCTACTGTAGTAAATAGGAACAAATGTTTTAATATGCTACCTGTGTTTTTCCTTCTACATCTATGTTCAGTCTTGTTACACACCAACCTCCACCCCTGTTAATCTTTAAACCATCTCTGATGTTTAAAATCATGGCGTAGTTTGAACATTTCTGTAGATTCCACCATTTTGTAACATGCTCCTACAATAAATAGCTgagttttgtattttttcccccttaaaaCTTAATTTGAAATTGCTTTCTAAAACATTAGTTTTCACGTAATGTGTTTTAAGGTTTGTGTTATCTTCTTTTTAAAAAGATGGTATTTATTACACGTTTTTCTACGCGTCCACAGTCGGCATGCCTGTGAGCATGAACTGTTAAAGACAGGATGATTCCATCACTTCCAAGGCTTTTTCTGTGCACAGTGTCGGTAAATGTCATTAAATTCACAGCAACATTATGGGGTGCACTGTAACAAAACTAGTATTTGTATTTGCTTACTTTTCTTAGCAATGACCTGTAAATATTTCAGCATTGTCTTTTGGATAAGACAAGTACACGTGTTTAATCCATGGATAAATTTATCAAATAATCTGGAGagttttttttcatcaacaTAACCAGAAAGTTATattttgtgtgctgtgttttatagAACACTGTAGTTTAAAGATACCTACTTGTTTGTTGCTTTGGTTCATTTTGTTTGCTTAAAGATAAATGTCCACCTTTTGACCTAATAAAATAGGCAGTTGTTTGAA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65816 lncRNA upstream 20218 12674342 ~ 12677678 (+) True G49301
TU65749 lncRNA upstream 36525 12660427 ~ 12661371 (+) True G49241
TU65712 lncRNA upstream 186318 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 221871 12474087 ~ 12476025 (+) True G49223
TU65700 lncRNA upstream 225624 12470450 ~ 12472272 (+) True G49221
XR_005639364.1 lncRNA downstream 22511 12726600 ~ 12732417 (+) True LOC120559802
TU65847 lncRNA downstream 76526 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 124492 12828581 ~ 12840565 (+) True G49330
TU65844 lncRNA downstream 131638 12835727 ~ 12844434 (+) True LOC120559236
TU65874 lncRNA downstream 216916 12921005 ~ 12928180 (+) True G49334
XM_039799438.1 mRNA upstream 27502 12662475 ~ 12670394 (+) True wdr13
XM_039799238.1 mRNA upstream 39588 12652384 ~ 12658308 (+) False LOC120558314
XM_039799239.1 mRNA upstream 39588 12652384 ~ 12658308 (+) False LOC120558314
XM_039799237.1 mRNA upstream 39588 12652611 ~ 12658308 (+) True LOC120558314
XM_039801970.1 mRNA upstream 47121 12646536 ~ 12650775 (+) False LOC120559891
XM_039801817.1 mRNA downstream 4554 12708643 ~ 12722596 (+) True LOC120559796
XM_039801818.1 mRNA downstream 4554 12708643 ~ 12722596 (+) False LOC120559796
XM_039801815.1 mRNA downstream 40471 12744560 ~ 12766040 (+) True zgc:162200
XM_039801816.1 mRNA downstream 40684 12744773 ~ 12766040 (+) False zgc:162200
XM_039801206.1 mRNA downstream 64720 12768809 ~ 12779241 (+) True nt5dc2
XR_005639089.1 other upstream 39588 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 239457 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 474258 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 487487 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 601059 12092779 ~ 12096837 (+) False LOC120559364
XR_005639216.1 other downstream 156632 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 828301 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1408961 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1409179 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1409179 14113268 ~ 14121022 (+) True hmga1a

Expression Profile