RNA id: XM_039799516.1


Basic Information

Item Value
RNA id XM_039799516.1
length 2250
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120558497
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11317430 ~ 11328619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAAGTCTGTAAATTATctcccctcttcttcttcttcctactTCTGAGTTCGACACTCGGAGAGGACACagTGGCAGAAGACATCAGTGTCCATCAGCTGGAGCGGTTAGTGGAGATGCTGACGTCTACGGAGTGCGAGGAGCTTCTGTTCGCCCTCTCTCACCCAGAGGAAAACATCTTCAAGCACGTTGAGCGCCTCTCACCACAAAAAAATCAACTCGATCTTAAGCCTCGAGCCAAGAGAGACACCTCATCTGCTGCAGATAGTGAGGCGCAGTGCCGGACGGCCCTGACAGACTGGATGCTGAGGTACGGCGATCAGACCTACTACGACAGGCTTTCTCGCGCCTTGCAGCACATCGGCAGAACAGACATTGCCATTGaagtgGGGAAGAACATCAACCAGGACAAAGCCTTGAGCTTGAAACGCTACGTTGAAGACTATCACAAATATGTCAACTCTTTAAACTTCCCACCGGTACAATTAGACACAAAGGGCCAACCGCATGAAGAACAGAAGGCCAGAACACGAACACGAAGAGtaagggATCTGACATGGCGTGACCTGGATCTGATCGTGGAGCGGGCCCCCGTTGCTGTGTATCAGAAGGGGCCTATGGATGCAGCTCTACCCCTCTTGTATGGCATTCTGCTGGGCTTCGGAGGCACCTTGCTCACAGGCGTCTCGATACTTGCCGTCATCGTACACATCTCCTTAGAAAGCAGCAGAGCTGTCACCGCAGGGTCACCGGGAGCCCCAGCAGCAAGCTCACGGTTGGAAATGTAATATTGAAAGATGCAGCTTCTGTGAGGTCAGAGGCTGCAAAATAAGCCGCTTAGGGGTTGAAATGGTCACACGTAAATAAAGGCAAAATAGACTATTTGTTTTACAGATGTGTCTTTTATGGAAGATTTAAAATGCCAAAATCTTTCAATCTCTTTGTCCACAACAATCAGCAGAGCCAACATAGAAACCCAATATCGATTCCACCACACCACAActaattatgacaaatatgacAAGTATAATGCAGTTTCAGATAAAGTAATTATCCATGCTGTGTATTGCTAGAGCGGTAGGCATTATTGTCTTGCCAGTGGGTAGATGACTAGCGGTGTGACAGATGCGCTGGAACCCAGCCCTCATACCAAAGGTTGTTCCGGTGTTACTGTGATAGTGATGCCACTCTCTATTTCCCCTCCAAGTGACGGCAATGTGCCCGTCTGGCATCGAAGAACAACTAATTATCCAGCCTGGCGCCTGCTTCCTTCGGAGCCTGCCGATACCTCCACAGGCAATCCAAAAGACTaataacaatgacaatgctagcaGACAATGGAGCACTCTTGGTTGTGATGGCAGCTTCTGGCGGGTGACAGAAGCCAAATAGAAAACACAgagctgtatttttttttggaacGTGTGAAGTAGCGAGGATTGTTAGCAAGCTGAAATTACTTGATATACGAGATGCTGCGGCAAAGTGGGTCCAGAAATTGGCATTGGAAAAgatcagaataaaaaaaattgtctgtATTAGAAGATTCAAAATAACTTTGGTTAACACGTGCAAGCTTAAATTAAGAAAATCATTTGCAATAACAAGGCTATTTTCACATACTCTGCCGAGTAGGTTTCATAACAGCTAGACAGAAAATGCGCTCGTGGCACTGGGGTACTTTCTCGCTTCTTGTTCCCAGTTTCTTACGCTAGCCCTACTTTCTTCTTCGTAATTGAACTAATTACTTCATTATACAAATCGGGCCTAATGTGATTCAGGAGGCAGACAGCTTGGATTAACAGTGGCACTAAGCAGCAATTACAGACAATTAGTTCATAAatcaacatttaaacaaatcataGTGCCAAACACGACTGCATGAGCAACGCTCTAAAAAGGCCAAAAGGGCATTATGGATTTGAGTTTTGACTTATTACCTAAATAATGGCCTACATATTCTGACACACACTACATGCTCTTCTTCTGTAGTCATATTATAGTGCTCTTTTTAATTGATACTGTAATTCATAAACCAATGCATACTTGATTTAAAGGTTTGAAGATTTGGCTTCGTAAAGCAAAAGCAGTAACATACAGTGACGGCACTTTGTTAACAGTTTGTCGTTCTCGCCATGTGTCTTTAGGACAACGTTGTGTTTCACCTTCATTACGAAGCCTCCCAGGTGGCACACAGCACAACTCTTCACAACAAAACTTCCTCTGTCcttcagtttttttcccccctt

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65118 lncRNA upstream 87064 11230007 ~ 11230366 (+) True G48763
TU65110 lncRNA upstream 108796 11208287 ~ 11208634 (+) True G48755
TU65017 lncRNA upstream 356948 10907360 ~ 10960482 (+) True G48680
TU65016 lncRNA upstream 405358 10910143 ~ 10912072 (+) True G48679
TU65006 lncRNA upstream 418298 10855502 ~ 10899132 (+) True G48670
TU65171 lncRNA downstream 106425 11435044 ~ 11456874 (+) False G48803
TU65172 lncRNA downstream 109653 11438272 ~ 11438557 (+) True G48804
TU65170 lncRNA downstream 125970 11454589 ~ 11456874 (+) True G48803
TU65173 lncRNA downstream 130723 11459342 ~ 11459749 (+) True G48805
TU65174 lncRNA downstream 132529 11461148 ~ 11461976 (+) True G48806
XM_039799395.1 mRNA upstream 505878 10758397 ~ 10811552 (+) True LOC120558407
XM_039799394.1 mRNA upstream 569877 10593784 ~ 10747553 (+) True LOC120558406
XM_039800732.1 mRNA upstream 733901 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 777078 10530663 ~ 10540352 (+) True LOC120559190
XM_039799830.1 mRNA upstream 791096 10326748 ~ 10526334 (+) False magi3a
XM_039799539.1 mRNA downstream 23995 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 23995 11352614 ~ 11382149 (+) False rapgef3
XM_039799543.1 mRNA downstream 24037 11352656 ~ 11382149 (+) False rapgef3
XM_039799546.1 mRNA downstream 24037 11352656 ~ 11382149 (+) False rapgef3
XM_039799540.1 mRNA downstream 25880 11354499 ~ 11382149 (+) False rapgef3
TU65120 other upstream 1438 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 143776 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 614049 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 1887483 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2199229 8990487 ~ 9118201 (+) False LOC120559255
TU65506 other downstream 764160 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 853590 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 894948 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 1123916 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 1323991 12652610 ~ 12658308 (+) False LOC120558314

Expression Profile