RNA id: XM_039799525.1


Basic Information

Item Value
RNA id XM_039799525.1
length 2884
RNA type mRNA
GC content 0.42
exon number 7
gene id tnfrsf9a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12892471 ~ 12896719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAGGCCACAGCACAGACACATTTCTTCCTATGATACCATTCATAACATTACTGCTGAGTGGCTTTAAGTTAAAGTTATTATAGTTTAGATTAAAGCTACaaatttagaaaaacaaaaaaattaagtgCCTTAAAAAATATTCAGTACCTGGGATATTTCTTGGATTGGATTAGCTCACGTTTTACCTGAGGTGGCTGTCATCCTTATCCTCAAGGCTGGAGAGCTGACAACAGTATGGCTGCAATCTTAAGGGCATTGGTTCTCGCTCTGCTCATTCAGGGCTGCTTTTGCAGTGTTGGACAGACTGACACAGGCTGCATGAAATGGACACCAAAAGGAGATCATGTTTGCTGTGAAGCCTGTTTTGCTGGAAACCGCCTGGTCAAAGAATGTGGCCCAAGCCCGAAAGATCTCTGTACTCCTTGTGAGGCCGGGACATTTACGGTGAACCCAAAACAGTACCGCTGTACCAGGTGTACACAGTGTGTAGgtgCTCAAGTCGATGTGAAAGAGTGCACTACCACAACTGACACAAAGTGTGGCTGTACAGAAGGACTCACCTGCGGTAATGACCGCTGTTCCTTCTGTTACAAAAAGTGTGACAAAGGTTATGAACCATATAAACGTGATTGCAAACCATGTCCAGAGGGAACCTTTAATGACCAAAGTCACCAGATGTGTAAACCCTGGAGTACCAAGTGTCCCAATCCAGATCAAAAGATTGCGGCCAAGGGAAATGCACTTATGGACATCAAGTGTGTTAATGTTTCAGTTGCCCCAGTGATCCGTCCAGAGCGACCTGATCCCACAGAGCAGGCATGGCCATTGGTCTTATCTGTGATCACAAGTGCAGTTCTGATGGCCTttagcatcatcatcatcagccttGTGGCCAAGAAATTCTTccagaaaagaaaggaaaaaggcaTAAAGCCAATCACGACCCAGATAATCACAACCCCTACAGATGAGCCAAAGACAGATAATCCTAGGACATTAATAGCCATTGAGTGCAGTTTCCACGAGGCCCAGCAAGAGCAGGGCAGCAGCTCAGAGTCGCTCTACTCCAAGGACTCCTCGAGCCAGCTCATTGCATGAAGAGAAGGGAAACTGGACTTGACTGCGCCGTTGAAGAACCTGCTATATTTGTGTTGAGTTTGGTGAAAGGAAACCGGATATCCTGAATAAGATGGAGTCCCTCTTTGTGATACTGgagatgtttttgttgtggcAATTTGTTTTGGCTCTAAATGAAAGAAACAGAGCACTGTATTCACCCAGCTGTATTTTATCCACCCCATTTTCGTTTTTCAGAATTACCAAAGATACTGAGAAAATCTTTATAGGTCAAGGTAGAGGTATCACTTTGCTGTACAATTACACCAGGATGTAATTATAGCGATGATACAGTAAATGCACACAGGGGAGGAAGGGGAATtctgagagggaaaaaaagtagTGGATTACAACAGTCCATTCATCATGTTAATTTGATCAGACACTGAGGctgttttttcccctttcaGTTAAGCCTAAAAGAAGATAGCTGTGAAAGGTTTGAATTATTGGATTGAGTTtggcaccagatgggaaaaatACCTAAGCCTTTAAACTTGTTTTAACTACTTTCAAACGATTGGACTGGTGCCAATAGCCTGTGTATAATATTGTCGTGTTTGAGTTTCACTCCTCTTATATTTGCATGTCTAAGCGGGAAAGCTGCGGAATGCTGCTGTGTGACTGTACAGTATGGGTGGGTGTTCAGCTGGGTGTAAAGGTCTGACGGCAGAGAGGTCTGAGTCACGCCTAAGGCTGAGCCCACAAATGCCTCCTAGGTATCTACGTTTTACTGCTGAATTTGTACATTTCTAACTGTGGCTGTGTTGCTGTGTCAATCATGATTTTATGTTGTGAAAAATGTATGATTTATCATGGGGACAGATTGCtattttggtttgttatttaaatatttctatAGAACACAGAAGATAACTTTGTTTACAATAGTATATAGTATCACTTTGAAGACAGCGTGGTATAGCCTCTTCGACGCTACTTAACATTACCAGGAACTATATGGACTTTCCAACAATTACTTCATTGGTGTCAAAAAGTCCAGCAGAGGGAGTTCCCTTTTTTGTGAATAGGTAATCAGATATTTAAACTTAAAACACCAAGAaacctacagtacagtacacagtCTGCATATGTAAAGTACCTTGGTGCTATTTTAGCGAGAATGGTTTAGTTGAGGTTTTATTCATGAACAAGCTGAGGCATGCCTGTTGAGCAAGAGTTTGGCAACACAGTGGATATCCCAAGGTCAGTATTTATGATTAAATGTCAGATAATGTGATTAGTCATGTGCTGCACATAGATCTCTGAGATTTCTATTAAGTGCGTCATGTGGGaaatcctctgaataaaaacttAGCAAATATATGAGGCaaacacaatataaaaaaactgAGGCTCAAGGGTTATGTGGAAACCCCCCAGTCAGTCTTGTACTCCTTTTTGCTTTTGGTTATCTTCTAGCACAATGGAGTAGGCAGCTAGATCAGACCAAGTGgaactttttttcttcacaaatgCAGGTCTTTTCTGAACTGTAGCAGGCGTATATCTTTCTACTGAAATGGAACATTTGCTAGCCCACACCTTTAGTACTGTATCAGGGACTATGAGTCACAGCTCACACATTGTGATGTCTGTTGAAAGACCACAAAGTTCACTGGTGCCTTGAAAAGAGGTACCACAGTAGTCATACAGTGAAAAGTAGTAAGGACTGTAGCACTTTACTTGTCAGCTGGTAGGACCAATGTTACGCACTTGTTTGGTTTGTGAATTTATCATTCTGCCTCATATCTATTTTATAAGAT

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65844 lncRNA upstream 48037 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 51906 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 108683 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 160054 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 214793 12674342 ~ 12677678 (+) True G49301
TU65874 lncRNA downstream 24286 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 31537 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 410121 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 469012 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 469012 13365731 ~ 13378409 (+) True G49474
XM_039800617.1 mRNA upstream 6247 12860724 ~ 12886224 (+) True LOC120559134
XM_039800618.1 mRNA upstream 6247 12860725 ~ 12886224 (+) False LOC120559134
XM_039800619.1 mRNA upstream 6247 12860725 ~ 12886224 (+) False LOC120559134
XM_039800620.1 mRNA upstream 6247 12875305 ~ 12886224 (+) False LOC120559134
XM_039800621.1 mRNA upstream 6247 12875935 ~ 12886224 (+) False LOC120559134
XM_039799527.1 mRNA downstream 15057 12911776 ~ 12920803 (+) True LOC120558505
XM_039799626.1 mRNA downstream 326274 13222993 ~ 13235009 (+) True dnajc11a
XM_039799627.1 mRNA downstream 326687 13223406 ~ 13235009 (+) False dnajc11a
XM_039799628.1 mRNA downstream 340751 13237470 ~ 13243293 (+) True LOC120558583
XM_039800421.1 mRNA downstream 359128 13255847 ~ 13259321 (+) True LOC120558998
XR_005639216.1 other upstream 8184 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 234163 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 434032 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 668833 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 682062 12182209 ~ 12210409 (+) False nol4la
TU66161 other downstream 635671 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1216331 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1216549 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1216549 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1668148 14564867 ~ 14567456 (+) True G49773

Expression Profile