RNA id: XM_039799539.1


Basic Information

Item Value
RNA id XM_039799539.1
length 3427
RNA type mRNA
GC content 0.47
exon number 28
gene id rapgef3
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11352614 ~ 11382149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATAAACAGCAATGACTGAAAGATCATCCTCcggcatttgaaaaaaaagcaaaggctgAAAAGAGAAAGCAGAAAACCCCGAAAAGCGTGGAAGCCAAAAGGCTGAAGAATCTTACACGAGTGTGCTAGTGATACTGTTCAATCCATCTCCTCGATGGAGAACTTGGTCAAATCCATCTGTTCCCCACCAAGACGTTGTACACCAGACATAAGTGAAACTCCGCTGCCAGAGGCCCTGAATTCAAAGGACACTATGAAGCAGGTGTGTACACCAGAGATGtttctTTCAGATCGTGTTGTGAAGGCAGCGAGATCAGTGTATAGTGTTATGATCGAGAGGAACCCGGGTCTGATCCGAGATAGAAAGTATCACCTCAAAACATACAGACAATGTTGTTCCGGTAAGGAACTTGTTGATTGGCTGATGAAACAAAATGAATGCCTGCAATCAAGAAGCCAGGCAGTTGGAATGTGGCAAGTCTTGGTAGATGAAGGAATCATTGTTCATGTGAAACACGAGTTGAACTTCCATGACAAGGACACCCAGTTCTACCGCTTCCAGGACTCGGAGTTTGGCCTCAACCACGTAACAAATGAGAAGGAGTGGGAGGACGAGCTGCAGGAGGCTCTGTCGCTGCTGTCTCAGCTGGGTCCCGATGCTCTACTCACTATGATTCTACGCAAATGCCCCAGTCAGAGGAGTGCTGAGGACCTGGAGGTCATCTATGAGGAGCTGCTCCACGTCAAGGCTGCAGCTCATCTCTCCACCTCTGTGCGTAAGGAGCTGGCAGCAGTGCTGGTCTTTGAATCACATGCCAAGGCCGGAACAGTCTTGTTCAGTCAGGGGGACAAAGGCACTTCTTGGTACATCATCTGGAAAGGCTCTGTAAACGTGATCACGCATGGAAAGGGCCTGGTAACTACACTACATGAGGGGGAGGACTTTGGGCAGCTGGCTTTGCTGAACGATGCCCCACGTGCTGCCACCATCATCTTGAGAGAAGACAACTGCCATTTCCTCCGTGTGGATAAACAGGACTTCATACGCATCCTCAAGGACGTTGAAGCTAACACAGTGCGGCTGGAAGAGCATGGGAAAACGGTGCTGGTGTTGGAGAAGAGCACCGACTGGGCCGCGCAGGGAGGAGCAGGAAACAACAGCAAGTACACGGTTATGTCAGGAACACCTGAGAAAATCCTGGAACACCTATTGGAAACCGTAAAGCTAGACTCTAATGGAAATGACGCAATAGCTCCCTGTGTGAGCGACTTTCTGCTCACCCACAAAGTCTTTATGCCCTCCAGCCAGCTGTGTCCCGCACTACATCACCACTATGAGGCAGAGCTCTCGGAGGGTACCGATCAGGAGAAGGCTTCCTATATTCTCAGCACCAAGCAGAAGGTAGTGAAGCTGATTGGCCAATGGGTGGCACTGTATGGCCTTCTGCTGAAAGAAGACCCTATTGCTTTGGACTCTCTGGAGAGGTTGAAGAAGGAGGTGGCAGGTGATTTCCGTCTGTCCAGCATGCTGAAAGAACAATTTAGGGAAAGGAGGAGAACCAAAGTATTGGAAAACGGATATCAGTCACTGAGCAGGAACCAGCAATTCGATTGGTTCTCAAACTGTGAGGAGCCAGTGGGGAGgttacaaccaatcagagcacaaGATAAAGTGCTGTATGAGATCTACAGACCAGACAACAAGCCTCTCACTCTGATGCTCCCAGTCAACACATCTGTACAGGACGTGTTGTCAGCGATAGTCAAACCTGGCACTGATCACATCCTGGTCAAAATGAACTCTACAGGAGAAAGAGCTCAGCTAAAGCTGGATGCGACTGCAGTCTACACAGCCCTGGGGCTCAACGagagactgttcatctgcacaaGCAGCCAAGTGGAACAACTGATGCCCCTGACGGAGCAGCAGGGTCCAGAGCGAGGAACAACGGACATCCTGGAACAGATGTGCTCCAAAGACATCGCCAATGAACTCACCAACTATGACTGGGAACTGTTCACTGCCATGCATGAGGTGGAGCTTGTCTACTACATATTTGGCCGTCAGAAATTCCCAGGTGCCATCACAGCTAACCTGGAGCGCTTTGTGCGTCGCTTCAATGAGGTGCAGTACTGGGTGGTGACTGAACTGTGCCTCTGCGAAGACCTGGTGAAACGTGCCATTCTGCTCAAGAAGTTCATAAAGATCGCTGCAGTATTAAAGGATCAGAAGAACCTGAATTCCTTCTTCGCTGTGATGTTCGGTTTGAGCAACAGCGCAGTGCACAGGCTTTACAAGACCTGGGAGAGAATACCCAGCAAGACAAAGAGAATTTACTGTGCTTATGAGAGGTTGATGGATCCATCACGCAACCACAGGGCCTACAGACTGGCTGTGGCCAAACTCAGTCCTCCCTACATCCCCTTCATGCCTCTGCTGCTCAAAGACATGACATTCATCAATGAGGGAAATCCAAACTATGTAGACAAATTGGTGAATTTTGAGAAAGTGCGCATGATCGCCAAGACAGTGAATATTGTACGAGGCTGCAGAAGCCAGCCTTACGTGCCATCGTCTCCACAGAGGGGCCTGGCAGATCGGATGTTTCTGGAAGCGCCTGCTACTCGCATATCCACATGCTCAGAATATGCCCTCCCTCTGCGGAGTCCCAGCAACATCCGACACTACATTCAGAACCTGAAGGTGATTGACAACCAGCGCAAGCTAACACAGCTATCAAGAACAATAGAATGCTAGGGCATCAACCTGCAAATGTGCAAagactgtataaaaaaataaataaataaataaaaaactgtagCGCAAATCTGAACCAGAGAAGAGATTGTAGCTGGATGAACAAAACTTCCACACTCGCCTACACAAGATGGATGTCTGGAGGCGCCGAGTGCCGTGGATTGACTCTAATTCAAGGAGCTTGGACATTCCTGGAGAAGCTCTCTGCACAGCAATGAAGAGTGACAATGTGCTGTGTGCACAATAATACCCTCTAACGATAAACCACAGAATCCAATTCTGTGTCCGAGAGACTTGtgggacacttttttttttttcttccaagaAGCTTCAGGACAGTGTGTATGCTACAGTGGAAACTGATCCCCTCACAAAAGCAATGTTACAACATGTACAGTTAAGCAAAGTATGCCCGTCTTTGGTGTCAAAATCATTTATGTGACATTTTATATACTGCTGTCTGTGGAAGAAGCACTCTGGTGGTTCTACAAAAGGGCCATAAGAACATATACTACAGATGTTTGCCATAGCAAAATCACTTTAGGTCAGTTTTTTTGTGCACTTTTTTTTCACTAATATATtgaatgagatttttttttggcaacGAAGCCACTAACTGACATCCATATAATTTCATACGTTTCCTtccaaataaattatttttctcAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65118 lncRNA upstream 122248 11230007 ~ 11230366 (+) True G48763
TU65110 lncRNA upstream 143980 11208287 ~ 11208634 (+) True G48755
TU65017 lncRNA upstream 392132 10907360 ~ 10960482 (+) True G48680
TU65016 lncRNA upstream 440542 10910143 ~ 10912072 (+) True G48679
TU65008 lncRNA upstream 481537 10867858 ~ 10871077 (+) True G48671
TU65171 lncRNA downstream 52895 11435044 ~ 11456874 (+) False G48803
TU65172 lncRNA downstream 56123 11438272 ~ 11438557 (+) True G48804
TU65170 lncRNA downstream 72440 11454589 ~ 11456874 (+) True G48803
TU65173 lncRNA downstream 77193 11459342 ~ 11459749 (+) True G48805
TU65174 lncRNA downstream 78999 11461148 ~ 11461976 (+) True G48806
XM_039799516.1 mRNA upstream 23995 11317430 ~ 11328619 (+) True LOC120558497
XM_039799395.1 mRNA upstream 541062 10758397 ~ 10811552 (+) True LOC120558407
XM_039799394.1 mRNA upstream 605061 10593784 ~ 10747553 (+) True LOC120558406
XM_039800732.1 mRNA upstream 769085 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 812262 10530663 ~ 10540352 (+) True LOC120559190
XM_039800358.1 mRNA downstream 116723 11498872 ~ 11503554 (+) True dazap2
XM_039801862.1 mRNA downstream 134495 11516644 ~ 11520131 (+) True si:ch211-210c8.6
XM_039799510.1 mRNA downstream 150050 11532199 ~ 11563315 (+) True LOC120558490
XM_039799511.1 mRNA downstream 181966 11564115 ~ 11579004 (+) True cs
XM_039800165.1 mRNA downstream 204729 11586878 ~ 11609087 (+) True ankrd52a
TU65120 other upstream 36622 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 178960 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 649233 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 1922667 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2234413 8990487 ~ 9118201 (+) False LOC120559255
TU65506 other downstream 710630 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 800060 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 841418 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 1070386 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 1270461 12652610 ~ 12658308 (+) False LOC120558314

Expression Profile