RNA id: XM_039799553.1


Basic Information

Item Value
RNA id XM_039799553.1
length 1692
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120558519
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2548939 ~ 2550724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgcCACCAGCAAGGAGAGAGCCGCGATACAGTGTGCAGGATGTGATTGATATCATCCAAAATGGGGAGAGTGAAGTTGAGATGGAACTCAATGACACTGATGAGAGTGATGAAGATGTCTGTCAACAAGTGGACAAAGAAAACCAACCACCCTTGGACTGTCCGGCTGATAATCACGTGGACATCGagccaaaaacaaacaaacacaccatGCTCCGCGACAGGTATCGCTGGCTGAAAAAAGATTTCATAAGTCCCAACACTGATTTTTCTGGTCTGGATATCACAGGAGATGACATTTCCCTCCACACACCATTGGAATACTTCCAGAAGTTTGTGTCCGAAGACATGATTGAGGCtctgacacaaaacacaaatgagTACAGCTTTCAGACACATGGAACATCTGTAAACACCACTGCAAAGGAAATtgaaaaaatgtttggcatgtcCCTGAAGATGGGCCTAGTACAAATGGCTGGAACCCGTATGTATTGGGAGACAGAGACACGGTACTCCCCTGTTGCTGATGTGATGCCGCGCAACAGATTCCAATCCCTGTTGACGTCATTACATTTTGTCAACAACATGACAGTATCTGAGAcggaaaagaaagacaaactATGGAAACTCAGACCATGGCTTGATTCATTCAGAGAGAAATGCCTGCAGGTGGTACCAGAAGAGCACAACTCTGTGGATGAGATGATGATTCCTTTCAAGGGGAAATTCAGCAGCATCAAGCAATATATGCGAGGCAAGCCAAACCCATGGGGATTCAAAGTGTGGGTGAGAACTGGAATCTCTGGCATGATGTGTGACTTTGATGTCTACCAAGGCAGTGTCAACGGAATACGAGCCAAATCTGAACTTGGATTGTCAGGTGATGTTGTGATGAAACTTGCTTCCACACTTCCAGAAGGTCAGAACTACAAAATGTATGCAGACAACTACTTCACCTGTGTTCCATTATTAGTGAAGCTCCTTGATCGGGGAATTCATTATGTGGGAACAGCCAGGCAGGTGCGCCTACCCAACTGTAACCTTGAAGACGAGAAGAGCTTGAAGAAAAAGGGGAGAGGAAGCTATGACAAGATTCAACGCTGGGACAAAGCCAACAGAACCTACATTGAAGTTGAGAGGCCTTACATTGTTGGTGCCTACAACAAGTACATGGGAGGTGTGGATTTGTTGGACTCATTTACAGCCAAATACAAGTTCCCCATCAAATCCCGTCGCTGGTACATGTACATCTTCTGGCACACCATCATTCTGGCTGTGGTCAATGCCTGGCTCCTCTACAAGCGGGACTGCAAAGCTCTCAAGATGTCTAGCAAAGAGACAATGAACAGGAGACAGTTTCAGGCACAGCTAGCATCCTCTCTCATCCTGGTGAACACAACCCTTCAAACTCCAAAGAGAGGACGGCCATCTCCAGGCAAAGGGAgcccagcaacacaggcagtgACATCAGGAAGCCCTCTGAATGCTCAGAAGAGACCGTCCAAGAGATGTGCACACCTTCCATTGGATGTACGCAGGGACCTTGTTGCACATTTCCCACGGAAGACAGGAAGAGGACGCTGCAGACACTGCGATAAAGGATACACCAACACGCAATGCAGCAAGTGTGATGTTCGTCTTTGCTTTTCAGAGGACAAGAACTGTTTTTGGGACTTTCACAACCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62293 lncRNA upstream 201382 2344461 ~ 2347557 (+) True G46523
TU62289 lncRNA upstream 209581 2338651 ~ 2339358 (+) False LOC120558501
TU62281 lncRNA upstream 226910 2321337 ~ 2322029 (+) True G46511
TU62271 lncRNA upstream 246721 2301946 ~ 2302218 (+) True G46501
XR_005639278.1 lncRNA upstream 260312 2282124 ~ 2288627 (+) True LOC120559436
TU62353 lncRNA downstream 15000 2565724 ~ 2566315 (+) True G46558
TU62369 lncRNA downstream 52474 2603198 ~ 2604255 (+) True G46564
XR_005639264.1 lncRNA downstream 87240 2637964 ~ 2645754 (+) False LOC120559425
XR_005639265.1 lncRNA downstream 87247 2637971 ~ 2645754 (+) False LOC120559425
TU62363 lncRNA downstream 87447 2638171 ~ 2640534 (+) True LOC120559425
XM_039801074.1 mRNA upstream 128081 2413571 ~ 2420858 (+) False LOC120559387
XM_039801073.1 mRNA upstream 128086 2413571 ~ 2420853 (+) True LOC120559387
XM_039799519.1 mRNA upstream 209510 2337336 ~ 2339429 (+) True LOC120558501
XM_039801109.1 mRNA upstream 316317 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA upstream 316317 2211176 ~ 2232622 (+) False LOC120559409
XM_039799556.1 mRNA downstream 95168 2645892 ~ 2647467 (+) True LOC120558523
XM_039801113.1 mRNA downstream 110848 2661572 ~ 2662342 (+) True LOC120559413
XM_039799557.1 mRNA downstream 202789 2753513 ~ 2757047 (+) True LOC120558526
XM_039799572.1 mRNA downstream 274533 2825257 ~ 2826712 (+) True LOC120558536
XM_039801086.1 mRNA downstream 595757 3146481 ~ 3166448 (+) True LOC120559392
TU62302 other upstream 158427 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 910769 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1025708 1522685 ~ 1523231 (+) True G46305
TU61892 other upstream 1264560 1277288 ~ 1284379 (+) True G46238
TU62381 other downstream 195174 2745898 ~ 2770453 (+) True G46574
XR_005639249.1 other downstream 728637 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 954584 3505308 ~ 3512484 (+) False LOC120559404
TU63394 other downstream 3648322 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 4147287 6698011 ~ 6705887 (+) False ccm2l

Expression Profile