RNA id: XM_039799636.1


Basic Information

Item Value
RNA id XM_039799636.1
length 695
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC120558589
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1015388 ~ 1045239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagaaaaaaaaggaaaaggttgTTGGGGCTGTCTTCTTGAGTTCCTGTCGACGACTTTCTGAGTGGGAGCAGTCGCTGAAACCAGGAAGATTAATACACGCCGAGTGGAAAGCAACCGAGCCAGTCTGCTGTCCACATTTCACACCAGTTGAGCTTAACTTTGAACCAAAAAAAAGCAGTCCCTGCTGTGTCAAGTCGACGCTGAAATGGACCCCGCCAGTCAAGATATAAACCTGAACTCTCCTAACAAGGGCCTCGTCGTGGATCATTCAGACAGCTTGTCCGACGTGCCGGTTGAGGGGGCTGTGGAGGGGGCGGTGGGTAACGCAGCCAACCCTCTCCCGCCGGGCCTGACCGAGGAAGAGGCTGAGGAGCTCCGCACAGAGCTCACCAAGGTGGAGGAGGAGATCAACACCCTGCGTCAGGTTTTGTCAGCCAAAGAGAGACACGCCACAGAGCTTAAGAGGAAACTTGGCCTCAGCCCGCTCACCGAACTCAAGCAGAACCTCACCAAGAGCTGGCAAGACGTACAGACCTCCAACGCATATCTGTCTGCCTCAGCCACTTTGGATGACATTGCCCGCTCTGAAGCATACAAGAAGACTCAGGAGACTCTTTCCCAGGCGGGACAGAAGACTAGTGCAGCTCTCACTACAGTGGGCACGGTCATCAGCAAGAGACTGGGCGACATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61776 lncRNA upstream 53586 920244 ~ 961803 (+) False G46156
TU61777 lncRNA upstream 87795 920244 ~ 927594 (+) True G46156
TU61772 lncRNA upstream 97055 918092 ~ 918334 (+) True G46154
TU61748 lncRNA upstream 108261 903558 ~ 907128 (+) True G46134
TU61747 lncRNA upstream 111919 902816 ~ 903470 (+) True G46133
TU61790 lncRNA downstream 1307 1046546 ~ 1054320 (+) False G46160
TU61877 lncRNA downstream 153771 1199010 ~ 1199211 (+) True G46227
XR_005639370.1 lncRNA downstream 199601 1244840 ~ 1247771 (+) False LOC120559832
TU61887 lncRNA downstream 202263 1247502 ~ 1247736 (+) False LOC120559832
TU61893 lncRNA downstream 232049 1277288 ~ 1283232 (+) False G46238
XM_039800004.1 mRNA upstream 4552 984169 ~ 1010837 (+) True trim101
XM_039800005.1 mRNA upstream 4552 984169 ~ 1010837 (+) False trim101
XM_039800007.1 mRNA upstream 29118 938976 ~ 986271 (+) False LOC120558777
XM_039799642.1 mRNA downstream 3733 1048972 ~ 1053010 (+) True adrm1
XM_039799490.1 mRNA downstream 523056 1568295 ~ 1608445 (+) True LOC120558473
XM_039801109.1 mRNA downstream 1165937 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA downstream 1165937 2211176 ~ 2232622 (+) False LOC120559409
XM_039801108.1 mRNA downstream 1165937 2211176 ~ 2232329 (+) False LOC120559409
TU61671 other upstream 115093 793902 ~ 900296 (+) True G46066
TU61880 other downstream 191076 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 232049 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 232049 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 477446 1522685 ~ 1523231 (+) True G46305
TU62038 other downstream 590709 1635948 ~ 1638170 (+) True G46328

Expression Profile