RNA id: XM_039799773.1


Basic Information

Item Value
RNA id XM_039799773.1
length 1386
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC120558666
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7633880 ~ 7650645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattaactGTGAGCGCGCACAGCACGCCCCCGTTTCGTCCATCAATCCGCGGGGAGAGTGAACATGACGGCCCGGTCTGTGCGGTCCCTCTCCGGAGCCCTGAAGCTCGTGTTCAGCAACCGGTTAACCAGGGTTTACAGTGCGGCCGCATGTAATCAGAGACACAAGTCCACTTACACTCCTCCGCCGGCACTGTACGGAGGCAGACACACCGTGACTCTGATTCCTGGAGATGGCATCGGACCAGAGCTGGCCAAGCACGTGTGTGAACTATTCCGGTTCTGCTGTGTGCCAGTGGACTTTGAGGTTGTCAATGTGGACTCATCTGTGGACTCAGAAGAAGACATCAATAATGCCATCATGGCTATTAGACGCAATGGAGTTGCACTAAAagGTAACATTGAGACCAACCACAACCTGCCCCCCTCCTACAAGTCCAGAAACAACCTGCTCCGcaccacTCTGGATTTGTATGCCAATGTGATGCACTGCCAGTCCCTACCAGGAGTGAGGACACGCCACAGAAACATCGATATCATGATCATCAGGGAGAACACCGAGGGAGAGTACAGCAGCCTGGAGCacgagAATGTACCGGGCGTCGTTGAATGTCTGAAGATCATCACCAAGACCAAATCTCTACGCATCGCTGACTACGCGTTCAGAACGGCGAGGGCCAAAGGACGCGGACGAGTCACGGCTGTACACAAAGCTAACATCATGAAGTTGGGTGACGGCCTCTTCCTGGAGTGCTGTAAGGAGGTTGCCAGCGGTTACCCTGAGATCACCTTCGACAGCATGATTGTGGACAACACCACCATGCAGctggtTTCCAGGCCCCAGCAGTTCGATGTGATGGTCATGCCCAACCTGTACGGCAACGTAGTGAGTAATGTGTGCGCCGGGCTGGTTGGCGGACCGGGTCTGGTGCCTGGAGCCAACTATGGACAGGACTACGCCGTGTTTGAGACGGGCACCAGGAACACCGGGAAGAGCATTGCTAACCAAAACACGGCCAACCCCACGGCCATGCTGCTGGCCTCCTGCCTGCTGCTGGATCACCTGAGGCTCCACGCTTACGCCAGCATGATCCGCAGAGCCATCCTCTCCACGGTCACCGAGACTCGGCTGCACACGGTGGACCTGGGGGGCCAGGGCTCCACCTCTGAAGTGGTCCGCTCCGTCATGAACGCCGTTCAGAGCACCGGGCCCCTGACACTGAGCATCTAGAACAAACATTCATgtgcaaattctctctctctctctctctggcactGCAGAGTGCATATATTACAGTGTGCCTCTCTTCAGTAGTCTTCTATGCaatttcataataataataataacaagagaGTTGTTTGATAGTAATACTGAAATGAAActgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63822 lncRNA upstream 13791 7617240 ~ 7620089 (+) True G47798
TU63817 lncRNA upstream 30326 7603099 ~ 7603554 (+) True G47794
TU63811 lncRNA upstream 47923 7584663 ~ 7585957 (+) True G47789
TU63784 lncRNA upstream 164809 7468421 ~ 7469071 (+) True G47768
TU63777 lncRNA upstream 177141 7456475 ~ 7456739 (+) True G47762
TU63928 lncRNA downstream 191849 7842494 ~ 7902442 (+) True G47881
TU63971 lncRNA downstream 465735 8116380 ~ 8117222 (+) True G47909
TU64109 lncRNA downstream 681877 8332522 ~ 8333531 (+) True G48002
TU64129 lncRNA downstream 730442 8381087 ~ 8381428 (+) True G48017
TU64130 lncRNA downstream 730846 8381491 ~ 8381729 (+) True G48018
XM_039800058.1 mRNA upstream 354872 7271418 ~ 7279008 (+) True LOC120558796
XM_039800054.1 mRNA upstream 367445 7261702 ~ 7266435 (+) True LOC120558794
XM_039799659.1 mRNA upstream 453683 7172361 ~ 7180197 (+) True LOC120558604
XM_039800063.1 mRNA upstream 484494 7143788 ~ 7149386 (+) True LOC120558799
XM_039799658.1 mRNA upstream 498038 7126624 ~ 7135842 (+) True LOC120558603
XM_039799776.1 mRNA downstream 1428 7652073 ~ 7671014 (+) True LOC120558668
XM_039799774.1 mRNA downstream 3456 7654101 ~ 7671014 (+) False LOC120558668
XM_039799775.1 mRNA downstream 3456 7654101 ~ 7671014 (+) False LOC120558668
XM_039800369.1 mRNA downstream 80170 7730815 ~ 7764951 (+) True lima1a
XM_039800370.1 mRNA downstream 82162 7732807 ~ 7764951 (+) False lima1a
TU63466 other upstream 927993 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 1433286 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 4121396 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 4350710 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4863427 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 461796 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 692106 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 692273 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 692273 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 717998 8368643 ~ 8380578 (+) False pkig

Expression Profile