RNA id: XM_039799829.1


Basic Information

Item Value
RNA id XM_039799829.1
length 7132
RNA type mRNA
GC content 0.53
exon number 21
gene id magi3a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10326748 ~ 10526334 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtttaacgGCGTGGAGGAAGCTGCGAACACACTGGGTGTGTGGGATCGAGACGCCCCAGCATTAGAACCAGCACTTTCCGCTTCAATGCGACACTGACGCAGAGTCTCCTCTCGCATCCCCAGTCGCAGACTAGGTGATGCTCGAGTAATCCAATGGAAGGATCGATCGTCAACAGAGGGAgtttgatctaaaaaaaaaaaaaagaagccccAAAACATTTGTTTTCCCTGGAATGGAATACAACACAAGAAATTAGCCTCAACTTCTCTTAACCTGCAATGATTTTCCCATGCGTCATTGCGTTTTAGGAGCAGATCGCGCGGGTGTTGCGTTGAAGGACAATCGTTCTTGGACtctccccccccttcccccccctcccatcccacccccaccccccctcccagGTTCACAAGAGCTACTAACAATGTCCAAgacactgaagaagaagaagcactgGTCCACTAAAGTACAGGAGTGCACCGTGTCGTGGAGTGGTTCCGGGGAGTTGTCCACGGTAGTTGAGGTGCGAGGCGGCGCCGAGCTGGGGGAGTTCCCCCACCTCGGACACACCGTCTCGGAGGCGATGGTCTGTCACGCCGGGAGGTTTCCCTGCAGCGGGGACGTGCTGCTGGAGGTGAACGGCACGCCGGTGAGCGGGCTCACCAACCGAGACACACTGGCTGTCATCCGCCACTTTCGggagcccatccgcctcaagacTGTGAAACCAGGTAAGGTGTTGAACACTGATTTGCGTCACTACCTCAGCCTGCAGTTTCAGAAGGGCTCCCTGGACCACAAGCTCCAGCAGGTGATCAGGGACAACTTGTACCTGCGCACCATTCCCTGTACCACCCGGCAGCCCAGAGAGGGGGAGGTTCCTGGAGTGGACTACAATTTCATCAGCGTGGGGGAGTTCCGTGACCTGGAAGAAAGCGGGCTGCTGCTAGAGAGTGGCACCTATGATGGAAACTACTATGGGACCCCTAAGCCCCCTGCAGAGCCCAGCCCCGTGCAGCCCGACTTGGTGGACCAGGTTCTGTTTGATGAAGAGTTTGACACGGAGGTCCAGCGAAAACGCACCACCTCTGTCAGTAAGATGGACAGAAAGGACAGCGCCGCGCCAGAGGAGGAAGACGAAGAAGAGAGGCCTCCGATGGTCAACGGCCTGGCTGAGCACAAGGACAAGGCGGAGTGGCGGAAGACGGTGCCCAGCTACAACCAGTCAGCCGGCGCCATGGACTTGCGTGTGTGGAACACGCAGGACGAGAGTCAAGAGTCCTTGCCTAAAAACTGGGAGATGGCCTACACGGAGACCGGCATGGTCTATTTCATAGATCACAACAGCAAGACCACTACTTGGCTGGACCCACGCCTTGCCAAGAAGGCCAAGCCTCCCGAGAAATGCGAGGAAGGAGAGCTGCCCTACGGCTGGGAGAAGATTGTGGACCCCCAGTACGGCACCTACTACGTAGACCACATCAACCAGAAGACCCAGTTTGAGAATCCAGTACAGGAAGCTAAGAGAAAGTTCAGCGTTGACACGCCCGCTGCAGTACTGCCGCCGGCAGCTACGCCCTCAGCAGAGGAGCCCGCTAGGGGAGTGCGGGGCTTCACGCGAGATCCATCTCAGCTGCAGGGCTCCATCCTGCAGACAGCACTGAGAAAAAGCCCCCAGGGCTTCGGGTTCACCATCATCGGAGGAGACCGACCCGATGAGTTCCTTCAGGTCAAAAACGTCCTTCTGGATGGGCCTGCCGCACATGACAACAAGATCGCCTCAGGTGACGTGATCGTGGACATCAACGGGGCATGTGTGTTGGGGAAGACTCACGCCGATGTGGTGCAGATGTTCCAGTCCGTCCCCATCAACCAGTACGTAGACTTGGTCCTGTGCCGGGGCTACCCGCTGCCCGAGGACTCCAGCAGCAGCGAGGAGACCTCCGGAGGCCCCTCCACTTCCATGGACACTTCCCCCTCCACGTCCACGCCACAGGAACCCCCGTACACTGTCCCAGACGGAGGCACCCTCTCCAGGCAGATCGCTGCAGTACCGCCCATGGCCAACGGCGGAcgccaccatcaccaccaccaccaccaccatcatcctcaccaacaacaacaacaccaccaccacgTTTCTCACGCCGCCAACCCAGAAGGCCCTGACCCCACTCTGCTGCAGCCGGAGCTGGTGAGCGTCCCCCTGGTGAAAGGCCCCGGAGGTTTCGGCTTCGCCATCGCAGATTGCCCCCTGGGCCAAAAGGTGAAGATGATCCTGGACGCCCAGTGGTGCCGCGGCCTGCTGAAGGGCGACGTGATCAAGGAGATCAACAGGCAGAACGTCCAGACGCTGAGCCACTCGCAGGTGGTGGACATCCTCAAAGACCTGCCCGTGGGCAGCGAGGTCAGCGTGCTGGTGCTCCGGGGAGGTCAGACATCTCCTGTGAAATCCctaaaaccaTGCACGGCCGTATCCCAGCCTGCTCCCCAACAGGCGCCCCATGCCTCGCCCCAGCCTATCGGCCAGCCACAGCGACCGGAGACGGTTAACAGCGCAGAGGCCCTCGCTCAGGCCGAGGTGGCCCCCAACCCGCTCCCTTTCTCTGGCAACACCCTGCGCTCGTCTTCACCCAAACCGGACGCGTCGGAGCTCTACCTCAAGTCCAGGGCCTTGTTGGACAGCAAGCCTCCTAATACCAAGGACCTGGACGTGTTCATCAAACGGAACCAGGAGTCAGGCTTTGGCTTCAGAGTCCTCGGAGGCGAGGGCCCGGATCAGCCGGTGTACATCGGCGCCATCGTGCCGCTCGGCGCGGCTGAGAAGGACGGGCGCCTGCGGGCGGGGGATGAGCTGCTGTGTATAGACGGCGTGCCAGTCAAGGGCAAATCCCACAAACAAGTGCTGGAGCTGATGACCAACGCCGCCCGAAACGGCCAAGTCATGCTCACAGTCCGCAGGAAAATGACACCCGCAGGTGATTGtgaagaggaggagagcagTCAGCAGCCCCCGCACTTAGCCTCCGCCCTGGTCAACAGCTCTCCCAAGATGCCTCGGGGCGAGGTTCCCAACGCCGTCCAGCCCGGCCGGCCCGAGTGCTTTGACGTCACTCTGCAGCGCAAGGACAACGAGGGCTTTGGCTTTGTCATCCTCACGTCAAAGAACAAGCCCCCACCTGGAGTTATACCTCACAAGATCGGCCGTATTATCGAGGGCAGCCCGACAGACCGTATAGGTCAGATGAAGGTGGGAGACCGGATCTCTGCCGTCAACGGGCGCTCCATCATGGAGCTGTCGCACAACGATATCGTCCAGCTCATCAAGGACGCCGGCAACTCGGTCACCCTCACCGTCGTTCCTGAAGATGACAGCGCTCCTCCATCTGGAACCAATTCAGCCAAGCAGAGCCCTTCAGCACAACACAGAGCTATGGGCCAACAGCCTCCCAGCTATCCTGACAGGAATGGTGACACTGAGATGAGGAACTCTTTCCCACCAAGAGAGATGGGAACACTCGTCACGTCAGGCTCTAAGCAGGGCTGTTTGGTGGTGGAGCTGGACCGCAGCCAGCGGGGCTTCGGCTTCAGTCTGAGAGGAGGGAAAGAGTACAACATGGGCCTGTTCATCCTGCGCCTGGCCGAGGACGGACCGGCTCTTAAAGACGGCAGGATACacGTTGGCGATCAGATAGTGGAGATCAACGGCGAGGCCACCCAGGGCATCACACACACTCGTGCTATTGAACTGATCCAAGCAGGAGGCAGTAAAGTTCACCTGCTGCTTCGGCCCGGCCAGGGCTTGGTCCCGGATCCCAGTTCAAAGGACAAAGTAACCATTCCAACCTCAAGCTTCCCCAGACTCTCTGTATCCGACGGCCAGTCGGCGCCGGCGTCCCCGTCCTCGGTCTCCCTCTCGGCCTCGGAACTGTCCCCATCTTCGCCCAAAACATCCGCCCCTGAGGAGTTCTCCGGGGGGGATCCCAGGGCGCCGGGGTCCCCTGGCGCCGGGCAGGAGCCCGCTAGGCAGGCTAACCGATCGAGGGGACAGCAGCTCTCTCACCAGAACCATAGGCGCACCACCAGCCCCAGCACCCACACCGGGAAAACCAGCAGGAGTGACTCCAAGACCTCCAGTCCCATGCGAGCCTCTGACGGCGGGGCAGATCGCCAAGAGCGCTCTCAGAGCCCCAGGAAAGCCGAGCGAGGCCACAGCGGATCCTTGGAGGATGTGGGGAAAGACCGAAAACCCCGAGGGCAGCAGAGAGACCACCGCTCCTCCAGCCCCAGGAAGAGCTCCAAGAGGGAGCCGGACCCCGCTGCGCCCCTGAAGAACCCGGAGGATCCCCAGAGCCCCCGGCGTCCAGCCGGCCAACAACCCAGCGCCGCCTCCAGAGAAGACCGGAGGTACATGGAGGAGGATGGGGCCTACTGGCAGGAGAGGGGGGCCCCAGAGAGCGGAGACAAAAGCTCGGGGACCGGCGAGCGCAAGAAGAGCAAAAGGGCCGAGCAAGAGGCAGCGGCACAGAAATCCCACTCGCAGGCTCCCAGGGAGAGGGCCGGTTCGGACGCCGACAGCGGCACCCTAAGCCGGAGGAGCAGAAGGGAGAAGGGGGACAAGGAACGTCAGGAAAGCAAGTACCATGGGCCGCCTGAAGAAGTGAACCGGAAGGATCCCAGAGGTTCGAGCAGTAGCATCCAGGACCCCAGCTGCAACGGGACCGCCACCAGCAAGAAGGCTCCCATCACCCCCGGTCCGTGGAAAGTTCCCAGTTCTGCGAAGATCCAGTCCCAGGCGGATATCTGATCTCCGATATCCTCCCAGGACTCTCTGCGAACATTAAGAGAAAGGTGAGCCACTAAAAGATGTACTTTTCAGGATGGAAGGATTAAAATTTTTGATTTTATAACGATCCACGGACAAAGCAGATCACTGTGTAACCAGCAATGTGGCTTctcatgaattttttttttttttaattatattttttcacCCAGTTTGCCTCGGTCAGTTTGCATCCAGCTGCTGACAGTACGTGCTCGCACCGACAGGAGTGTTTGTACTGTGCGGAGATGTGCGTCTAACAGGTTGGTTAcctggttattttttttttcttttcttttcttttgggaTGCTACACTGAAGTCTATTGTGTGCCAATCAGAGACTCCGGTTATAAAGAAGCTGCTCCGTATTGCACTCACTGTGAGGCCGTTTGTGGTTAATGAGACGCACTGCTCTCCCTGTCTACCCGCCTCGATGAAGGATCCCGCtttgattttttattattttttttgtgtcccTTTTGAAGTTTTGAGACAGTCGCTCCGCTTTTCTTCCTGGCGAGATTGATTCAGCGTTGCTGTCACTAGAAAGCGCCGCCGGCGAGTTTCTCTTAAAAATCGTCCGCAAAAGGGTGCAACAGTGTCTTCTActgtccgttttttttttttttattcttctttccGAGAGCCAGACTAGAATTGTGAACTGTATGGGTGACTGTATTCATGCACATTAAACGACCCTCTGATCCCGCTGGCTTATCGGAGGGCAGACCGACTACCCCGGAGCTTTATATGCATCAATCAGCAGACCAGATACTTGTGGTTCTAGTTCTTAATGTTTGTTACATGTGTGTTGATATTAAAAAGCATAGTGTAATTTATTGAAATTATATGTGAGCAAAAAAACTGTTAGTACACATATCCATGTTGAGTCATTTCACTTTTGATGTGTTCTTAATGCTGGAAATAGAATGCGTAGATAAGCATTGTCACCTAAAAACAATAACCCTATGAAATCTATACATTCTATTTCTAAGATGTCGTGAAAAACGGTCACGTGAGCCCGATTCATGATGTGGTCTACTGTTAGCAGCTCTGTGTTTTAGATCCTCtggctatgtgtgtgtatgtatacaagCTGACTGGTAGgcctgtgtcttttttttttccttttctttttttaagataacgCATATGTAGCAGCGACTATACTTAATCCGAAACCTATATCATTTAACAAAGTGACTACTCATATATTGACACGTACTTTAGATGAGTAACGGAGCGTGATTGTAAGAAGTGAGACCTCTGCCTTCAACTTAAATGAAAACTTTAAGAGAGAATTGTATTTTTATGATCACAAATGtaggcacaaaaaaaacatatcccCTTTCCCTCATTCTAACCTCCAAATCTATTTTTGAtccacttttgttttatttagtaCATAACCCATAATGtgagaaaaatgtaaatgtttgatttatttgttCATCATTAACAAAATCATGGctgtcacgtttttttttttttttttttttctttcattataAATAAAGCCAGACTCTCTAAGAATGCGGTTATATTTTCCACACAAGGAGAGAGAGTCATCACAATATGCTTCCCTTTAGCGGTTGCACACAGTGCATAATGTGAAAATGGCTTGACTTGCTTCTTTGGGAGTCCTATTTAAAATTGCTCTATAAAGATTATCAAATTTAATCAAACAGGAATTTAAGTCCtagatgaagaaaaaacaatataaatattatataattttatatttattggGATCAGTTGTGGCCTACTCTGAAGACAAAATGTAGTGTTTAAATGTTGCTACTGTGGAGTACAGAGACATCTAGTGGTTGATAAAGTGCTATTCACCGACTGGTCGTCGTTTGAGCCGTAGCCTTATCAGCCGGTTTAAGGATGTACAGAAGAACCCCATGCATTGGTCTGTGAAACCACTTACTAATTTAttgtccactttttttttttttttatatgatggGCTACTGTATAATTCACTGTTCATGCCATTACCGTGTATGATCCTGTGGCCTTGCATCGCtccaacatatatatacatatatataataaaaagtcTTTTAGTTTTGACATCATGGTAGTTGTAAATGTTTATAAATTGTACAGCACCTGTATAAATATTTGCCTTCAtgcagaacccccccccccccccctcaccccccTCTGTAAATcgtttcattatttttttaagggaGCTGAGAGGAAATGATATACTGTAAAATGGGTGAAAAGAAATAATCTGGTCATGGCATTCTGTTCATGCActgataaataaaggtttactGAATAAA

Function

GO: NA

KEGG:

id description
K06112 MAGI3; membrane-associated guanylate kinase-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64776 lncRNA upstream 175551 10149880 ~ 10151197 (+) False agmat
TU64760 lncRNA upstream 312365 10010836 ~ 10014383 (+) True G48507
TU64733 lncRNA upstream 401678 9924700 ~ 9925070 (+) False ubxn10
TU64731 lncRNA upstream 405940 9920048 ~ 9920808 (+) True G48481
TU64628 lncRNA upstream 522402 9803739 ~ 9804346 (+) True G48415
XR_005639230.1 lncRNA downstream 17675 10544009 ~ 10560240 (+) True LOC120559193
TU64943 lncRNA downstream 59825 10586159 ~ 10586543 (+) True G48639
TU64973 lncRNA downstream 87873 10614207 ~ 10750428 (+) True G48640
TU64954 lncRNA downstream 97557 10623891 ~ 10703381 (+) False G48640
TU64968 lncRNA downstream 97557 10623891 ~ 10703381 (+) False G48640
XM_039799835.1 mRNA upstream 10112 10303395 ~ 10316636 (+) False tmem269
XM_039799834.1 mRNA upstream 10112 10303427 ~ 10316636 (+) True tmem269
XM_039799836.1 mRNA upstream 10112 10306488 ~ 10316636 (+) False tmem269
XM_039799818.1 mRNA upstream 38608 10163002 ~ 10288140 (+) False hspg2
XM_039800729.1 mRNA downstream 4329 10530663 ~ 10540352 (+) True LOC120559190
XM_039800732.1 mRNA downstream 48267 10574601 ~ 10583529 (+) True LOC120559192
XM_039799394.1 mRNA downstream 67450 10593784 ~ 10747553 (+) True LOC120558406
XM_039799395.1 mRNA downstream 232063 10758397 ~ 10811552 (+) True LOC120558407
XM_039799516.1 mRNA downstream 791096 11317430 ~ 11328619 (+) True LOC120558497
TU64544 other upstream 896801 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1208547 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1600196 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1638784 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 87697 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 646261 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 788328 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1566445 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1655875 12182209 ~ 12210409 (+) False nol4la

Expression Profile