RNA id: XM_039799884.1


Basic Information

Item Value
RNA id XM_039799884.1
length 2667
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120558716
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16418835 ~ 16424181 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCCATATCCTGTGTGGCTCAGCTGCAGCTGCATGGAAACAGAGAATCAACTGGAAGCAGCATCATCCCATCCAGTCTCTGAGCCTACCGCAGGGCTAGCTTTACACGAGCCTGCATGAGCACTACCAGCGTCAGTCAGCTAGCTAGTCAGTCATTCAGCTGGTTTACCAACAAAAATGGCACAGTTGAAGCATTAAAAGTGTCCTTCCAAAATGTGAAATTCTGCCTGCGTAGTGTGAACCAGCAGGGAATCAAACAATCCTCAGTGGTTCGGCGGACGTGGTGGCTTTGCAAtaaggATCATGTGGTGGGCCTGGCCATTCCTGCCTGCTCTGGTGCTTCTCTCAGAGCTCTCTTTTGTGAGAGTTCAGACTGCGCCATGCCAGACCTGCCGAAAACTCACAGAGAGTTTCATTAAGGGCTTAGAGAGAACAGCTAACAAAAACTTTGGGGGAGGAAACACTGCCTGGGAAGAAGAAAAGCTGGCCAAGTATGCACGCAGTGAGACTCGGCTCCTAGAGATAGTGGAAGCCGCTTGTGAAAAAGCAGATTTTGAATGTAACCGGCTGCTTGAGCAGATAGAGGACCAAGTGGAGACATGGTGGTTCCACAGGCAGCAGGAGGCACCGGACCTGTTTGAGTGGCTGTGCATAGAGGAGCTAAGACTCTGCTGTCCACCTGGACGCTTTGGACCTGACTGCAAAGAGTGTCCATCGGACCCTGGTGGTGTGTGTGGAGGTCTGGGCCGCTGCGAGGGGGAAGGGACTCGCCTCGGAGATGGAGAATGTGTCTGTGATCCTGGATACTCGGGCCGTCTGTGCCAGAGCTGTGCTGATGGCTATTATAGAGAGAAAAGCTCCAACAACAGCATAGGAGCCTGTGCAGCTTGCTACCACTCATGTAAGAAATGTGCGGGGCCACAGGACTACAAATGCCTCGAGTGCAAAGCCGGCTGGATCCTTCATGACAACAAGTGCGTGGACATTGACGAGTGTGGTACAGAACTGGCTCGTTGTCCTTCTAACACCTACTGTCACAACACAGAAGGATCATATGAATGCAGAGGCTGTGACCAGGCATGTGTGGGCTGCATGGGTAGTGGTCCTGCCCGCTGTAAGAAGTGTGCACGTGGCTACAAATTGAGTGGAGCGAAGTGTCTTGATATAGATGAATGTAGTGATCGTGCAATAGCATGCCCAGGACTCAATGAGGCCTGTACCAATGAGGAGGGCTCCTTCCACTGTGACTGTGCTGATGGATTCATTAGAAGAGATAGCATATGTGTTGAGAATAAGCCCCCTGCTGGCCCAGAGAAGGGGCTGTTTGACGATATGACAGATGATGAGGTCCTTGTACTGCAGCAGATGTTCTTTGGCGTTGTGATCTGTGCCATAGCAACGCTCGCCGCAAAGGGTGACATGGTTTTCACGGCCATTTTCATTGGAGGTGTAGCTGCTATGGCCGGATACTGGCTGACAGAAAAGGGAGACTTAATGCTGGATGGATTTCTGAAGGGACGCTAGACTGTCTGGAGCCTTGATTTGAGAAAGGACACTGGAATACCAGCCAGTTAAAGTGAATAAGACTCAACTGGGGGCAGGAGACTATCCCTGTAATGCTAGCCATTCAGGGATTGACTTGGGGAGTTACTTGAAAGGGCTTGGGTTCATTTATGTTTACGGATAGCATAATACAGGAAAAAGTGAGAACTTGAAGGCTACTTCATGTTGCTTGAAGAGGAATATCAAAGCAACACTGCACTGATATAAAGGGAACTGAACTTAATCCTCTACCTCATGTCACCCTTTGTGTGACATGAAAACCACTACTGATTGTTAAAATCTATTATGCATTTGGATGTCTCATCTGGCCTCTGTGTTGAAATTGTCGTTTTCTTCCACACAATCAAAACCTCCAGTCATCATGTCCACCCTGTGTTTTATTATCTCAATGCTGTGAAGCAGAGGGTTTCCCGTAGACTGAATGGTATGTGAATTTTGTCTGTCAGGTTACTGCAACACTCAGAGCTTCTTGCAGTGGGCATGTGGTAAAATATGGAATGTTTAGGATCACCCCAAAGAGAAAGCTCATCGAAACTCTGGGATATTTCCATTATGAGCCACTGGTTATTTGTGTTCACAGAATTACTTTTACCTCCTTACTTACTGAAAGATTCTTTTTAGTAATAATGCATGAAAATAGGATTTGAAATGACAGgtactgcactgtatgtattaatttatttaactttgGCATGGAAGACTGACTTTAACAGCTGCTGGATCACCAACACAACTGCTATTGACCACTTAATGTGTATGAGGGAATGTTTTTTGGTAAATACCAGCTCTGATCTGGATGATTAAGccatttttgttgcctttttatttattttgaaagcaaTATTTATTGGGAAGATGTTTGTCATATTTTGCTCTCAACATTTCCTGTGGATTTTTATGTGTATTTCcatgcagtttttttatttattttttattctgttcAATGTTATTTCTAGCAGATATAGTAGCATCATGTTTAAGCCACTGAAGCATCACTTCTTACCTGACCATCTACTGTCTTTGATTTTCTTAGTGTGGAAGGTTTTCCAGTCATTATTAGTTATATAGATGTTTGCTTTACAATAAAATGTCTGTCACTCCTCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24335 CRELD; protein disulfide-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67104 lncRNA upstream 39191 16365020 ~ 16379644 (+) False LOC120559119
TU67095 lncRNA upstream 39751 16375308 ~ 16379084 (+) False LOC120559119
TU67076 lncRNA upstream 107818 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA upstream 107818 16305349 ~ 16311017 (+) False LOC120559121
TU67086 lncRNA upstream 107818 16305349 ~ 16311017 (+) True LOC120559121
TU67180 lncRNA downstream 1437 16425618 ~ 16425820 (+) True G50280
XR_005639171.1 lncRNA downstream 120088 16544269 ~ 16545835 (+) True LOC120558722
TU67226 lncRNA downstream 142820 16567001 ~ 16569382 (+) True G50318
TU67228 lncRNA downstream 155878 16580059 ~ 16580993 (+) True G50320
TU67237 lncRNA downstream 181784 16605965 ~ 16626218 (+) True G50326
XM_039799877.1 mRNA upstream 423 16409281 ~ 16418412 (+) True wu:fl23c11
XM_039799878.1 mRNA upstream 423 16409281 ~ 16418412 (+) False wu:fl23c11
XM_039802021.1 mRNA upstream 10374 16397669 ~ 16408461 (+) True LOC120559923
XM_039800597.1 mRNA upstream 22627 16380044 ~ 16396208 (+) False brpf1
XM_039799873.1 mRNA downstream 5398 16429579 ~ 16450630 (+) True ift122
XM_039799874.1 mRNA downstream 5398 16429579 ~ 16450630 (+) False ift122
XM_039799875.1 mRNA downstream 5398 16429579 ~ 16450630 (+) False ift122
XM_039799876.1 mRNA downstream 5398 16429579 ~ 16450630 (+) False ift122
XM_039799885.1 mRNA downstream 27587 16451768 ~ 16459991 (+) True LOC120558717
TU67161 other upstream 13230 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 24603 16380044 ~ 16394232 (+) False brpf1
TU67106 other upstream 39191 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other upstream 41346 16375308 ~ 16377489 (+) False LOC120559119
TU66854 other upstream 551466 15863912 ~ 15867369 (+) False G50045
XR_005639235.1 other downstream 553717 16977898 ~ 16994701 (+) True eif2d
TU67547 other downstream 761730 17185911 ~ 17197173 (+) True G50523
TU67812 other downstream 1317279 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 2257962 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 2305299 18729480 ~ 18729551 (+) True trnaa-ugc_5

Expression Profile