RNA id: XM_039799949.1


Basic Information

Item Value
RNA id XM_039799949.1
length 1622
RNA type mRNA
GC content 0.44
exon number 9
gene id rap1aa
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12068413 ~ 12082842 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTAACCTGAAtagctgtgattggctgatccTGATCCAATCATTAGCTACTGCTGCTCCGACCCTTCCGTACATTCACACAGTGTGATTTATCGCACACATAGCGGAACACGGGCCAGTTTCCTGTCTGATCACTTTGGTGTAGCCTGGTTTTCTGGCTCCCAACCGACCCTCAGCACCTGCCCGCTGACATCAGTGTATCTGAGGATCTGCCGGCGCCCCCCTCCCCAGATGTAGAGGGAGTTGTCAACTGCAGCAGCCGTGTACACAACCCCTGTGCTGTCCAGTGAAGTTGCCCACCATGCGTGAGTACAAGCTAGTGGTGCTGGGATCAGGAGGTGTGGGAAAATCAGCACTGACAGTCCAATTTGTGCAAGGCATTTTTGTGGAGAAGTACGACCCCACAATAGAAGACTCCTACAGAAAGCAAGTCGAGGTGGACGGGCAGCAATGTATGCTGGAAATCCTGGACACGGCTGGAACAGAACAGTTCACGGCTATGAGGGACCTGTACATGAAGAATGGCCAAGGCTTTGCTTTGGTCTACTCTATTACAGCACAGTCGACATTTAATGATCTACAGGACCTCCGGGAACAGATCCTGCGAGTAAAAGACACCGAGGACGTTCCAATGATCCTGGTGGGAAACAAATGTGACCTGGAGGACGAGCGTGTGGTTGGCAAGGAGCAGGGGCAGAACCTGGCCCGTCAGTGGAGCAACTGTGCCTTTTTAGAGACTTCAGCTAAATCAAAGATCAATGTTAATGAGATTTTCTATGATCTGGTGAGACAGATCAACAGAAAAACACCGatggaaaagaagaagacaaaaaagaaGTCGAGTTGcacattgctttaaaatgccCTCCCACAGCAGCTCCAGGCCAGAAACGTGTGTTGATTAACTGTTTCCCAGTGGATCGTGCCAGCATTCCAAGTCCTCTCCAGAGCGTTTTGAAAAAGGCCGACAGATACGTCACCACTCGCAAAATGGCAGGAGACGGCACATACTCTCAAGATACTCTTCTCTGCTTTTTAATAGCGAAGAAATCCACCTTCATTTTTATTGTCCACTTGATGAcaactctgtttttgttttatttgttgttgtttttcttctccGAGGTGTCTTTCTTTTGGAAATATCAGTGTAAAAGAAGAGACCATGGGTTTAAATCCATATATGGGAACTAAAGTGTTTTATTAAAAGTAACTTCCATCTTTAGTATATTGTGACatgtttgcaaaatgaaaccATATGAAATGTTGGCCTTCTCATACATTTCTGCACTAACAGTGTCAACAAAGATGCATCATTGTCCATAAGTAACTCGCTCCTACTTACAAGGATGTGTATTGATGACATAACATCTTTCCTAAGtgactttgttttttattgagaGCTGCAAGCCTTCCATATTTCCCATAATATATTCTACTTCCATTTTTGCATAATAAAGCTAAGGAAATTAGTATTTTATAGActgatgggggtgggggggggaatgGTTTGTTCGGATTTGTGTCTTGAGGCTGAAAATATATTGTACTAAACCAACTCTAATATTGCTGTCACAGATGATTTTCCAGCTTTTATGAATGATTAAATTTTagtacatttt

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65403 lncRNA upstream 85678 11953174 ~ 11982735 (+) True G48978
TU65413 lncRNA upstream 160541 11907779 ~ 11907872 (+) True G48986
TU65407 lncRNA upstream 164934 11881963 ~ 11903479 (+) True G48980
TU65391 lncRNA upstream 205473 11860254 ~ 11862940 (+) False LOC120559701
TU65499 lncRNA downstream 7413 12090255 ~ 12090723 (+) False xkr5l
TU65536 lncRNA downstream 59300 12142142 ~ 12142527 (+) True G49086
TU65544 lncRNA downstream 63362 12146204 ~ 12146526 (+) True G49094
TU65559 lncRNA downstream 128902 12211744 ~ 12212515 (+) True G49105
TU65564 lncRNA downstream 137171 12220013 ~ 12223054 (+) True G49106
XM_039799947.1 mRNA upstream 5150 12043329 ~ 12063263 (+) True kdm5bb
XM_039799948.1 mRNA upstream 6137 12043095 ~ 12062276 (+) False kdm5bb
XM_039800844.1 mRNA upstream 44466 12017664 ~ 12023947 (+) True tuba5
XM_039800843.1 mRNA upstream 50846 12008707 ~ 12017567 (+) False LOC120559247
XM_039800842.1 mRNA upstream 53348 12008707 ~ 12015065 (+) True LOC120559247
XM_039799251.1 mRNA downstream 1610 12084452 ~ 12090773 (+) True xkr5l
XM_039801027.1 mRNA downstream 9979 12092821 ~ 12103899 (+) True LOC120559364
XM_039799909.1 mRNA downstream 46994 12129836 ~ 12141802 (+) True LOC120558724
XM_039801835.1 mRNA downstream 99367 12182209 ~ 12210409 (+) True nol4la
XM_039801555.1 mRNA downstream 158204 12241046 ~ 12243801 (+) True LOC120559656
TU65120 other upstream 752421 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 894759 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1365032 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 2638466 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2950212 8990487 ~ 9118201 (+) False LOC120559255
TU65506 other downstream 9937 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 99367 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 140725 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 369693 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 569768 12652610 ~ 12658308 (+) False LOC120558314

Expression Profile