RNA id: XM_039799955.1


Basic Information

Item Value
RNA id XM_039799955.1
length 853
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC120558753
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28390403 ~ 28399081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtattgtaggcctatataaggCAAAGGCAGTTCTTGATCCAGCATAACAGCCTACAGGTGTGTCTCTTCCAGCCAGCATCTGTCTTACTGTTCACCTCAGACCAGATCTTCTAAAACCATGCTCTGCTTCACACTCAGCACCACACTGTTGCTGGCAGCAACGTGTTCGCTCATGACAGCAGTTGTCTCCACAGAGAGAGCTATCACCTGTGGCAGCAACAAGAATGTCCAACGCCTGAGCTGCGATGACGGAGTGATCAGTGTGCAGACAGCACTGTATGGACGTGCAAACGCTGTGACCTGCAGTGAGGGAAGACCTCCGGCACAGCTCGCTAATACAAACTGCTCTCAAGCGGGCACAGTGGACGTTGTCAAGAAAAGGTGTGATGGCAAGAGGGAGTGTGAAGTAAACATCAACGTATTTTGTACCTCTGATCCCTGTTATGGCACCTACAAATACCTGGACACCACATACACCTGCCTCCCAGCAATTCACATTGATGCCTGTGAGGGCTCTTTGGCGCAACTCCAGTgtgATCAAGGACAGGTTATATTTGTGTATGGTGCCGACTATGGACGTCGTGACCAGACCACCTGCATTTACAAACGGCCTCCCAATCAAGTTCAAAATATCTACTGCTCAAGCCCCACACGCAAAGTTGCTGACAGCTGTAATGGAAAAAACAGCTGTACCATCGCAGTGAGCAACTCTGTGTTTGGAGACCCCTGCAGCAGCACCTACAAGTATCTGGAGGTGGCTTACACATGTGATTATCCTGGGACTGCTCCGCTTCCATAGTGTAAGCATACTGAAGTTTCAGTCAAATCACAATAAACATGCAATCAATTAAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71854 lncRNA upstream 68924 28324728 ~ 28324933 (+) True G53770
TU71809 lncRNA upstream 197101 28196546 ~ 28196756 (+) True G53734
TU71770 lncRNA upstream 235924 28156713 ~ 28157933 (+) True G53696
TU71747 lncRNA upstream 448002 27945651 ~ 27945855 (+) True G53681
TU71713 lncRNA upstream 538716 27853478 ~ 27855141 (+) True G53649
TU71887 lncRNA downstream 8190 28407271 ~ 28407914 (+) False LOC120558754
TU71892 lncRNA downstream 47361 28446442 ~ 28447927 (+) False LOC120558758
XR_005639178.1 lncRNA downstream 47430 28446511 ~ 28454275 (+) True LOC120558758
TU71885 lncRNA downstream 101506 28500587 ~ 28502913 (+) True G53782
TU72007 lncRNA downstream 556479 28955560 ~ 28955816 (+) True G53884
XM_039800450.1 mRNA upstream 16686 28363176 ~ 28377171 (+) True LOC120559025
XM_039801188.1 mRNA upstream 71078 28319637 ~ 28322779 (+) True casp9
XM_039800448.1 mRNA upstream 89579 28199573 ~ 28304278 (+) True soga1
XM_039801788.1 mRNA upstream 250056 27954399 ~ 28143801 (+) False bsna
XM_039799959.1 mRNA downstream 8255 28407336 ~ 28415747 (+) False LOC120558754
XM_039799957.1 mRNA downstream 9704 28408785 ~ 28415747 (+) True LOC120558754
XM_039800451.1 mRNA downstream 21448 28420529 ~ 28442383 (+) True LOC120559027
XM_039800878.1 mRNA downstream 60080 28459161 ~ 28500476 (+) True cep104
XM_039800879.1 mRNA downstream 60080 28459161 ~ 28500476 (+) False cep104
TU71867 other upstream 47941 28341922 ~ 28345916 (+) True G53775
XR_005639289.1 other upstream 71078 28319650 ~ 28322779 (+) False casp9
TU71748 other upstream 402147 27954417 ~ 27991710 (+) False bsna
unassigned_transcript_233 other upstream 601293 27792492 ~ 27792564 (+) True trnar-ccu_2
unassigned_transcript_232 other upstream 630420 27763365 ~ 27763437 (+) True trnar-ccu_1
TU72069 other downstream 897523 29296604 ~ 29314747 (+) False nadka
TU72074 other downstream 916802 29315883 ~ 29323204 (+) False nadka
TU72220 other downstream 1161032 29560113 ~ 29567773 (+) False ano11
TU72298 other downstream 1353365 29752446 ~ 29758010 (+) True G54103
TU72299 other downstream 1353365 29752446 ~ 29754247 (+) False G54103

Expression Profile