RNA id: XM_039799974.1


Basic Information

Item Value
RNA id XM_039799974.1
length 2599
RNA type mRNA
GC content 0.53
exon number 11
gene id zbtb48
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9535407 ~ 9544237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGAAACGAAAACAAGGTGCATGTAGCGGCTTTGCTACATTTTCAACCTATTTACAGTACACCCGGAGCGGGTGCAGCTTCTTAACAATTAAACAGATAAATTACCAGTTCCATCGATACTGCAGATGTGAGTCTCGAGCAGCTGTGGGcagcagcagactgcagtGAAAGCGGAATGATGCCTGCAGAAGAGAGCAACCATGCCCAGCGTGTCCTGTCCTCCCTGAACCAGCAGAGGGCAGTAGGGAGGTTTTGTGATGCAGTGTTGAATGTGGGAGGCGGGGTGGTGTACCTGGCCCATCGCGGCGTCCTTGCCTGTTTCAGTGAACTGTTCCAGCAGCCCAACGAGCCCAAGGAGTTCTTCCTGGAGGAGTGCCCCAGCGACGGCTTGGAGCTGCTCCTGAACTTCGTCTACACCGGGGAGCTGAAGCTGGACCCTGAAAACCTGGACAAGGTGCAGCATGCAGCAACCAGCCTGTGTGTACCAGAGGCACTCACACTCTGTCAGCAGTTCAAGGACACTTTGGATCCTGCGCCTTTTAAGCGCAAAAGAGGCCGACCTAGGAAGTCCACATCAGATACGACCCCTCATTGTTCAGTCAAAGAGGAGAACTTGGTCACAATCACAAAAGATGAGCCCAGCTTTGACACTGCTCTGACCCATTTTAGCATGGCTGTCACTACCACCACGCGCTCTGGCCGTGTAGTGAAGGGCCCCAGGCGACTGGTGACTGATGTAAGCCCCGACACTGATTTAACAGTCCCTGAAAAAGCTGGCAAGAAGGCTCCACTtattcccagagagagagaaagtgatgaTGTTGTTGTGGAGAACCCAAACCCAGATCAGCAGACTGGTGAAAACGAGATAACAGACTTGCAGGTTGACATTAATGACAACGGTGTTAGCCAGGCAattgaggaagaagaggaagatgatGTGGGGGATTTTGAGGGGATGACTGAAGAAGACACCGATGAGGAGTATGTGCCCGTTGAAGAGCCCAGTTCCTTGTCCCCGTCCACATCGACGGCACGGAGGCGCAAAGCCCAGAGTACAACCAACGGAAAGGAGAATGGCGAGGCTGTGGAAGAAGGCTCCAAGAAGGACTCGGTGCAGTGTCCCAgctgtgacaaatccttcaaGAGCAAATACTACCTCAAAGTCCACAACAGGCGGCATACAGGCGAGAGGCCCTTTGGTTGCCTTAAATGTGGGAAGAGGTACTTCAGGAAGGAGAATCTTttgctacatgagctcagagactGTGCTAAAGTACAGACGTACACCTGCGTGACATGCTCCTCGACGTTTAAAGGAAAAGAAGAGCTACGTTTGCACGTCATCTCCCACACAGGAAACATGCCCCACAAGtgTTCAATTTGTCCTGAACAGTTTATGCACAAGAAAAACTTGACAATTCACATGATGAAGGTCCATGGTTATCCCAAACCACACGCATGTCCCCAGTGCCCCAAAACCTTTTTAACTCGGACGGAGCTGCGTGTGCACGAAGCAGCCAAACACCGAGGCGAGAAGCCGTTTGTGTGCGAGGAGTGTGGCCATCGAGCGTCTAGCCGAAACGGCCTGCAGATGCATATCAAAGCCATTCACAGAAATGAGCGCCCTTTTGTATGTAACTTATGTGGCCATGCATTCTCCCAGAAGAACAACCTAAACATGCATCTGCGTATACACAGCGGTGAGAGGCCGTACCAGTGTCATCTCTGCGGCAAAACCTTCAGGATGCAAGCCAGTCTGGATAAACACCACCGGACGCACACCGGCGAGCGTCCGTTTGGCTGCGACGTTTGCGAGCAGCGCTTCACGGAGAAAGGCGCCCTTGTCCGCCACAAGGCCAGCAAGCACGAGGAGGGCCGCCCCCACTCTTGCCACATATGTGGGAAAACCTTCAAAGCGAGGGAGCAACTTCGCGTTCACCTACGTCGCCATAAGGGCATGAGGAAGTTCGAGTGTATAGACTGCGGCTACAAGTTCACTCGACAGGCACACCTGCGACGGCACATTCAAATCCACAAACGCACGGAGAACTACAACCCCCGGATGAGGAAACTGAGGAACGTGATAGTGCAGGTCGTGGACATAATTCCCGGTGAGAACGGAGGGACGAAGGAAGTGGAAGAGCCGCTGGTGGCCGAGGACACATACTACGTCCCGGAGAGTACCGACGTCCAGGACTCCGACACTGAACCAGAGGCCGACTCGGGGACGGGCCTCGGTTCCAGCTGCACGGTGAGCGGGGTGACCAAGTCGAGCGGCGAGGTGATAGAGGTGGTGGTGTCCAACCAGAACCCGGGATACGTGGAGGCGGCCGAGGAGAGTTTCTCTGAGGAGTACGAGTCCACCATGGTTATGGAGGGAATGGTTGGGAATCTATCCCAGAGTAAGACCTGAGGACTGAAAGACCAGCGACTGTGTGCAACCCTGCGCAGAGTTAAAGTTACTGTGAAGACCACTTCTTTAATGAGAAggacttaaagggtaactaccgtttctttcaacctggaccctatctTCCTACgtttttgtgtctgagtgactgatggcaacaacaatctttgacattggtcctgtat

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64579 lncRNA upstream 13823 9520758 ~ 9521651 (+) True G48369
TU64534 lncRNA upstream 154030 9367885 ~ 9381444 (+) False G48338
TU64533 lncRNA upstream 154030 9378958 ~ 9381444 (+) True G48338
XR_005639287.1 lncRNA upstream 190360 9301354 ~ 9345114 (+) True LOC120559475
TU64501 lncRNA upstream 247812 9287059 ~ 9287662 (+) True G48310
TU64566 lncRNA downstream 1837 9546074 ~ 9550823 (+) True G48365
TU64591 lncRNA downstream 51823 9596060 ~ 9596433 (+) True G48381
TU64609 lncRNA downstream 177926 9722163 ~ 9726205 (+) True G48396
TU64610 lncRNA downstream 183591 9727828 ~ 9730567 (+) True G48397
TU64611 lncRNA downstream 207093 9751330 ~ 9751648 (+) True G48398
XM_039800158.1 mRNA upstream 169396 9357972 ~ 9366078 (+) False cd40
XM_039800157.1 mRNA upstream 169397 9357972 ~ 9366077 (+) True cd40
XM_039799463.1 mRNA upstream 299458 9234160 ~ 9236016 (+) True LOC120558451
XM_039800356.1 mRNA upstream 324915 9200752 ~ 9210559 (+) True pfdn4
XM_039800854.1 mRNA upstream 413562 9077753 ~ 9121912 (+) True LOC120559255
XM_039799983.1 mRNA downstream 53389 9597626 ~ 9689330 (+) True syt6a
XM_039800365.1 mRNA downstream 209832 9754069 ~ 9761924 (+) True sdf4
XM_039800988.1 mRNA downstream 357753 9901990 ~ 9904443 (+) True LOC120559338
XM_039800989.1 mRNA downstream 372290 9916527 ~ 9918632 (+) True LOC120559339
XM_039801490.1 mRNA downstream 378363 9922600 ~ 9925081 (+) True ubxn10
TU64544 other upstream 105527 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 417273 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 808922 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 847510 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 1069794 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1628358 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1770425 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 2548542 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2637972 12182209 ~ 12210409 (+) False nol4la

Expression Profile