RNA id: XM_039800009.1


Basic Information

Item Value
RNA id XM_039800009.1
length 1283
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120558778
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10023340 ~ 10116835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTCTCCACAGGCACACTGAGGTTTGGCTTGGTTAAGGATTTCCTTGCATCTCTCCCCTCCTTGGTGGGACGTACGCCAGATTGGGATTTTGGCGCTGAAAAAccttgagagagagagcgctctGGACTGGCCGATTGTGAGGACCTCTTGGTTGGAGCTAGCTGTGAGTGCTGACTGGAGATGATAAGTCAAAATATGGCTCCGCTGCCAGGCGCTGCTAATGTGCTGTTGCTTTTGGCCTTTTCTTTATCAGGGACGTCTCCACAGAGGATCATAGGGGGTCAGGAGGTCCTGCCTTACTCTATCAAATACCAGGCATCGCTGCAGTTCAGTGATACCAAGCAACACTACTGTGGAGGAACCTTAGTGCACCCTGAGTGGGTGGTCTCTGCTGCCCACTGCTGGAGACCGAGCAGTCGAATGCTGGTGGTGTTAAGTGAACACAGCCTGGACAAGGAAGAAGGATTTGAACAGGTCTTTAATGTCTCAAAGATATTTGTCCACAACTTTAACTACAACTCATTCGACAACGACATCATGATGATCAAGCTGAGTAGGCCGGCCCAGCTGAATGCTAACGTCCAGCCAGCTGTTCTGCCTGATGATAGCGCTCCTTCACTTTATAATGACGTGTGCACAGTGAGCGGCTGGGGTGTGACACAGATTTACAGTTACTCCCTGTCTCCTGTGCTACGTTCTGTGGACGTGAGAATAGTTCCCTACTGCTCTTATTACTACTGGGGGAGGATCACTTCAAACATGCTGTGTGCTGGATCTCAATTAGGTGGCAAAGATTCCTGCCAGGGTGACTCCGGTGGTCCCCTTATCTGCAATGGCCTCTTCGAGGGCATTGTCTCCTGGGGTATCAGCTGCGCAAACCCTTACTTCCCTGGAGTCTACACCAAAGTGAGAAACTACATCCCTTGGATCAAATGGATCACGGAGCAACAATAAGACACCATGAACAGTCATCACAATCCTTGATGAGCAGCCTGCAAAGACAGGCTTCAAGATTTAttcattttgaaaacaaatagCAATGGCCTATTTCATTACTAATAACTTTCTTTGTGGGGGTTTTCTTTATAACACTAACTATCACCTTCACAGACTTAGTTTAATTGCAATTCATAATGTTGGGGTATGCTATATAGAGCCTGGGTTATCATCTCTAGATATAAGGTTTCTGGGAAATGTGTTAATATGCTTACAATTAATTGATTTCCATTCATTTATTGTTCTGATagagaaaatacagaaataaaccCATTATATTGTca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64760 lncRNA upstream 15149 10010836 ~ 10014383 (+) True G48507
TU64733 lncRNA upstream 104462 9924700 ~ 9925070 (+) False ubxn10
TU64731 lncRNA upstream 108724 9920048 ~ 9920808 (+) True G48481
TU64628 lncRNA upstream 225186 9803739 ~ 9804346 (+) True G48415
TU64613 lncRNA upstream 263137 9764056 ~ 9766395 (+) True G48400
TU64776 lncRNA downstream 33045 10149880 ~ 10151197 (+) False agmat
TU64888 lncRNA downstream 287217 10404052 ~ 10404759 (+) True G48594
TU64897 lncRNA downstream 394987 10511822 ~ 10542926 (+) True G48602
XR_005639230.1 lncRNA downstream 427174 10544009 ~ 10560240 (+) True LOC120559193
TU64943 lncRNA downstream 469324 10586159 ~ 10586543 (+) True G48639
XM_039799236.1 mRNA upstream 30218 9996288 ~ 9999314 (+) True fam43b
XM_039801491.1 mRNA upstream 59609 9936549 ~ 9969923 (+) True vwa5b1
XM_039801490.1 mRNA upstream 104451 9922600 ~ 9925081 (+) True ubxn10
XM_039800989.1 mRNA upstream 110900 9916527 ~ 9918632 (+) True LOC120559339
XM_039800988.1 mRNA upstream 125089 9901990 ~ 9904443 (+) True LOC120559338
XM_039800014.1 mRNA downstream 1850 10118685 ~ 10131254 (+) True pink1
XM_039801749.1 mRNA downstream 22763 10139598 ~ 10151251 (+) True agmat
XM_039799814.1 mRNA downstream 46167 10163002 ~ 10288140 (+) True hspg2
XM_039799820.1 mRNA downstream 46167 10163002 ~ 10288140 (+) False hspg2
XM_039799821.1 mRNA downstream 46167 10163002 ~ 10288140 (+) False hspg2
TU64544 other upstream 599585 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 911331 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1302980 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1341568 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 497196 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1055760 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1197827 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1975944 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2065374 12182209 ~ 12210409 (+) False nol4la

Expression Profile