RNA id: XM_039800024.1


Basic Information

Item Value
RNA id XM_039800024.1
length 4979
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC120558783
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12513254 ~ 12556372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAAATATCCCGTCAGCCGTGCACATCGCCTCTGACTTTCTCTGGGATACGGTGGTACCATATACTCATCACTGCATTCCCACACTGCATTTTAGCACACatcaggctgctgctgctctttaaACAACTCGTATTTATTTATAGGCTTATTATTTCACCTTAGTCGGGTCGATGTATATAGACGCTTTCAAACGGATCCTCTATGAAAGGCTGAACTGCttgaaaagaatgtgtgtgtgtcagcgccAAGGCAGCTCATTTGCCATGTCTAAGACAGCGGTGAAGAAGCTGCACTGGCGTTCCAAGGTGCAGGACAGCTTCGTCCCGTTGCTCGGCTCACCGGGGGAGCTGGGGATCGCCATTGGTGGAGGAGCAGATTATGGAGAGTTTCCTTTTGTCACGTCGGCGCCGGGGGGCGGACTCACAGTGGGTGATATCATCCTAGAGATTGGGGGAACGCCAGTATTAGGGATGACATTAGGAGATGTCCGTGGCGTCCTCAACTCCTGCCCCCATCCGATCCGCATCAAGACTGTGTCACCAGGCTCCGCATTGTGCAAGGATCTCAGATTGTATTTGAGCAAGTGTTTCACCCCCGGCTCAGTGGACAGCCAACTTCAGCAGGTCATCCGAGAGAACCTCTACCTCCGCGCTGTACCCTGTACAACCAGACAGCCCAGAGATGGGGAAATCTCAGGCGTAAACTACAACTTTGTCTCCATTGAGGAGTTCTTCTCCTTGGAGGAGTCGGGAGCGCTGCTTGAGAGCGGAAAGTTCAAAGGGAATTACTACGGCACACCTCGGCCCGTTCACATCAGCGCAGAGAGCCCCCCCATCACCTACCAGGAACACCGCAACCTGCTCAGAAACTTCCGCACACGCAGCAAATCGCTCAGCAACCTCGAGAAGCCTGCAGAGGACGGCGAGAACAGCGAGGACGACTCGGGCCTGTCAGGAGGCTCTGCAGGTGTCAACAGCAGCGTCCCTCCTAGCCATCGGAGCCCCGGGCGGCCCCGGGCTTCCAGCAGCGGGGATGGTCGTGCCATAGAGAACGGGGTCATCGGCAGCAGAAGTGGTGCCAGGGTGAGAGGTGTGATGCCTGATCACTGGGAGCAGGCCTTCAGTGACCCCGGCGAGTCTCACTACATAGATTGCAACCCGAAGAGGACCAACTGGCAGAGTCCTCGAGCCTCAAGCAGAGAGACTGTCTACAAAAATGAATGGTTCACGGACCAGCCTGGGGAGCTCAGGGGTTTCCCTGTGCACACACACTTGACCAAGGGCTCCAGGGGGTTTGGTTTCAATATTGTTGGGGGCAGCAGGCCAAGAGAGTTCCTCCAGGTCTACAGTGTGACTGCAAGTGGTCCCTCAGCACTCAAGACAGCGGACATCCTGGTGTACATCAATGACTTTTGTGTGTTGGGGGTGTCTCACAAAGAGGTGGTAGAGATGCTCAAGTCTGTGCCTGTGGGCCACACTGTGGATGTAGAGGTTAGAAGAGGGTATCCCATGCTCTACAACCCTGACGGTTGTCCCAAGCAGCCCCCGCCAAGGCTACTCGACACCGGGGAACCCATCCTACCACCCACCACCACCCAGCCTCAGCCTCTGCACCAACTACCTCGTCTCCCGACACCCACTCCCAACACCCAGCACTTTGACTATAACGGGCTCCACAGTGACGGGAGGTACATGGAACCAGGGGCGACTCTAGACGCTAATGGAAATGCTATGTCTTTCGCTACCAGACAGCCGGCCTCATACAGACGCTCCAGCATGAGCAACGCTGCCTCTCCCCCGCCTGTGCGTCCTCCTCGTTCACTGAGAAGTTTAGCCCGGCTGCAGTCGTTCGACCCAACGCTCGCCAGCCAGAGTGACAGTGAAGTTGTTTCTGCCATTGGTTCCCACAGGGCATCAATTATCCGTAATCACAACAATAACTCCCTCTCAACACCCCCTCATCCTTATCGTCACGGCACATCCAAGTCGTCTGAGAGTGACCTGTCCACCTGCACTCTGACGGGGTCCCGGCTGCCTCTGCCTCAGTCCCCGAGGAGGCCCTCGTCCTCCCCCAGCGGCCCCCACAGCGCTCACTCCCGCCTCTTCAGACCGCAGACCTCACATCTCAGACCTCCTCCCACCCCTGACAGCCCACACCATTACCGTGGCTTTAACGGTTTCCATGGCAACACCAGCCCCACTGCAAGTCGCAGCAGTGTGTCCTCTCCTGGGGCAATGAGTGTGGGCAGTGCAGTTGGCAGTTTGAGCGGAGGGGAGCTGGTGCCGGTGGCCTTGGGCAGGATCGAAGGAGACCGAGGACTCGGCTTCAGCGTGACGGCTGGCGGTCCGGCAGGCAGGATGACTATAGTGAAAAGAGTCTGGGACAGGAAGCAGTGCAACTCCCTGCAGCCAGGGGATGCTATTGTCAAAATCAACGGAGCAGATGTCCAGAGTCTTAGTTTTACACAGGTACAAACAGTTCTCcaggaacacaccaaacaggcGGAAGTCATCTTGTTGATTTACAGAGGAGGCATCTATCACTCAACCATCTCCCCCGGCTCCACCCGGAGACTCCCTCCGCCTCTACTccgccctcctcctccacctgttgGTTCAGACATCTCCTCTGTGCTCCCAGAAGCACTGCCTATGCCCCGTACCTGCATCAGCAACCCTGCCTCCCCAGCCCCGATGCGCGCCTCGCTGATCCAGAGCACCAGTTTTTTGGAGTCGATTCCAGTGACCCTGACCATGGAACCCAAAGACTGGATCAACACGGGCCTGGAGGACGAGGCGGGCGGTGTCACAGTTCCTGACTCCGGTCTGGAGAGGGAAAGTGGGGAACGAACTTGGCCGCTCAGAGGGTTTGATGTGGAGCTGAGGAGAAAGCCAGGAGAGGGCTTTGGGTTCGTCATTGCCTCTCAGGATGTGGAGAATGGCAAAGCTGCTTCACTTCTCCCTCACCGGTTTGTGACGGTACGCAGAGGCAGCCCGGCGGCCAAGAGTGGTCAGATTCGGCCTGGAGATCGATTAGAGGCAGTAGAGGGACGCTCGGTGGTGACCCTGCCTCATCGGGAACTTGCTCAGATCCTTCGTCGAGCAGGAAACACTCTGCGCCTCACCATTGTCCCCCGACCCAGCACCTattcTTCAAGCCTTTCAGAAACCACTGAGTATGACCCCGGTAACAGAGGCAGAAAGGGTCAGAGGTTGCGTCCAAAGGTGAGCGATCAGCTTGTGGAGATCAATGGGGACAGTACAGCAGGGATGACCCACAGCCAGGCGGTGGAGCAGATCCGCAGAGGAGGCCACCGCATCCACCTGGTCCTCAAGAGAGGAAACGGCTATGTGCCTGACTATGGCCGTGAGCAGAGAAtcgcccccccctccctcctgcaTCACCCCAAGGAGCAGGGTTTGGCTGCAGTAGACTCCACCGGGCGGAAGGGGCGCAGCTCCAAGCAGAAGAGGAGAAGCAGGTCTTCAAATGGAcgtgagaaagaggaagggacaGGAAGGAGCAGAAGAAAACGGGGCTTAGAGGGAGGAGGAAGCCCGGCTTTACAAAGCCCCATCTCTGAGCGGGAAGAGAGGTCTCTGGAAGCCAGGgacaagaggaggagggggggaggaggaggaggaggaggagaaagaaagagtcCCAGAGTTTACACAGAGATGCCCTCAGGAGTTATGATGATAGTGACACAGAAAGAGGGACAGTGAGGGGAAGGAAacgggagagggagagagggaggagcaaAAGCAGAGAAAGCCAAACTGAGGAGAGGGTGAGGAAGGCAGAGGGTAAAGAGTctgaggagaaggaggaagagcaTCAGGTGCCTGCTGTTGAGGAAAAGGTGGAGGAAGTAGAGGAGAGAGTCAGTTTAGAGATAGAGGAGAGTGACGATGATGTTTTCTTACCCATTCCAAGTCTTAAGCGAAAGCTTCCCACACCCAAACAAAACTGGGAGGTGATGTATGATGAAAAGTGGGACATGGCAGCAGAGTACCGGGAGCAGGAGAGGCCACGGGGTGATTACAGGGGTGGCAGTAGAGAGCCAGGGCTGAATGAGGATCAGCAAGACGACGATGCACAAAGCTGGCGTGTCGAGAGGCCTTCACGAAGCGTTGCTGCGATAGATCCGGTGTCACAGAGAAAGCACTTCTCCTTCCTCGCCTCCAAACTGTCGGTAGAGCAGCTGGACGACGATGAGTTAGAGTCCGGAGGCAGCGAATCTGAATCTGACAGCAGCGTGTCAGCTGCCAGCATCTCAGGCCTTTCTCTGGCCGCCACAGAAGCTGGCGGGCACACGGTAAAGGTGCTCCCAGGCCCTTGGCTCCCACCCAGCCAGCAGAGGCTTGCTCAGGTCGTGGAGGGTGACAGGCGCCCCGGGAGGCGGACAGGGCAGGCAGGAGGGAGAAGCGCTGTCTTTTGACTTTTAACTGGAAGTAGAGCATGCAGCAGTATCAGATCCTGTCAGTCTCACACTGTTAGACCTCGACTTGTTTTTCTGCAGCTACCCACACTACCAACATGTTCTCTCAGTCACTTTGATATCTACAGTATGAAGTCATATTCTTTGTGCCTTTTTAGAGCTGACCTCTGGCTGATGTTAAATGTCAATATCACAACTTGTAAATGACACCAACATGGTAAAGTTATGTCTGTTTTgctggtggaaaaaaaaaataacattgtcttttttttcagagGCACTGTTGCCCTCACTATGTATCACTCCTCTCCTTACTTTTGCAGCATTAGTCATAGATGTTTCCCGGACAACAAGGTATTTCAGACACCTTGGTTTAACCTACTTCCTATCTCTCAGTCACCTCTCGGCATCTCTGTCTTTGCGCCGCTTTAGCAGAGTAATCCTCTCTAAAGTGCCGCCCTACTGTACAAAGACATTTATGTATACCTCATGAAGATACTGAGCAATAAAAATGCAACTGTCCAAGACTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65712 lncRNA upstream 1676 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 37229 12474087 ~ 12476025 (+) True G49223
TU65700 lncRNA upstream 40982 12470450 ~ 12472272 (+) True G49221
TU65626 lncRNA upstream 148813 12364093 ~ 12364441 (+) True G49157
TU65598 lncRNA upstream 209851 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65749 lncRNA downstream 104055 12660427 ~ 12661371 (+) True G49241
TU65816 lncRNA downstream 117970 12674342 ~ 12677678 (+) True G49301
XR_005639364.1 lncRNA downstream 170228 12726600 ~ 12732417 (+) True LOC120559802
TU65847 lncRNA downstream 224243 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 272209 12828581 ~ 12840565 (+) True G49330
XM_039800031.1 mRNA upstream 8912 12499369 ~ 12504342 (+) False pqbp1
XM_039800030.1 mRNA upstream 8912 12499377 ~ 12504342 (+) False pqbp1
XM_039800033.1 mRNA upstream 8912 12499613 ~ 12504342 (+) True pqbp1
XM_039799408.1 mRNA upstream 126981 12381032 ~ 12386273 (+) False LOC120558417
XM_039799409.1 mRNA upstream 126981 12381035 ~ 12386273 (+) True LOC120558417
XM_039800152.1 mRNA downstream 5439 12561811 ~ 12587368 (+) True iqsec2b
XM_039800154.1 mRNA downstream 5439 12561811 ~ 12587368 (+) False iqsec2b
XM_039800095.1 mRNA downstream 34535 12590907 ~ 12611168 (+) True kdm5c
XM_039800097.1 mRNA downstream 34535 12590907 ~ 12611168 (+) False kdm5c
XM_039800096.1 mRNA downstream 34536 12590908 ~ 12611168 (+) False kdm5c
TU65687 other upstream 54815 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 289616 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 302845 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 416417 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 1197262 11314662 ~ 11315992 (+) True G48765
XR_005639089.1 other downstream 96238 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 304349 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 976018 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1556678 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1556896 14113268 ~ 14121022 (+) False hmga1a

Expression Profile