RNA id: XM_039800049.1


Basic Information

Item Value
RNA id XM_039800049.1
length 1644
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120558791
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7027077 ~ 7066173 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGGGTGTGATGTGTTTGGAGGAGGGACTCCATCATTTAGAGAAGTGAACAGTTCCTGGTTTACcagtgaagaagaaagagaggcagcGTCAAACCATCAGATCCTCCAACATGAACGTCTGTCAGTCTCTGAtctgcttcttcttcctcaCACTGCAGGATGGAAACATTGGTCTCATCAATGCAGAAATCATCGAGAGTACAGGAACTGAAGGAGGAAACATCACAGTTAGATGCTCCTTCACTTTCTCTGGAAAGAGGAGAATCTTCTGTAAGGACAAATGTAAAGATGGAGACATTCTCATTGACACAGAAGAGGACACAGCTCAGAGAGGCAGATACAGCATTGAATATAAAAATTCAATATTTTCTAAGACAGTTCTGTATGTGAGCATCATAAAACTGAATAAGTCTGACTCAGGACAGTACTGGTGTGGTTTGGAAAGATCTTTCTCATTCTCATCATCATACCAGGAGATTGAGATCCGAGTTACAGATGcACTGCAAGATGGAAACATTGGTCtcatcaatgcagaaaaccttcAGCGTACAGGAACTGAAGGAGGAGACATCACAGTTGGATGCTCCTTCACTTTCTCTGGATATAGGAGGATCTTCTGTAAGGATGAATGTAAAGATGGAGACATTCTCATTGACACAGAAGAGGACACAGCTCAGAGAGGCAGATACGGTATTGAATATAAAAATTCAATAATGTCTGCTACAGTTCTGTATGTGAGCATCACAAAGCTGAATAAGTCTGACTCAGGACGGTACAGATGTGGTTTGGTCAGATCTTTATTCCCATCATCATACCAGGAGATTGAGATCCGAGTTACAGATGCTCCAACCTCTCCTCTCAGACCTTCTTCACCATCAGTCCCATCAGCTTCAacactgatgacatcacagagTTTAAGCTCCACCCCTTCATCAGCCTCCCCTGAAGCCAGCGAGCAGCCtcgacaaaaacacacaacaccagCTGCATCTGCAGCTCACGCCCAAAGAGCTCTGCTGTATGCGGGTCTGACTCTGGTCCTCTTCTTCATCATGTTATCAGTAGCTTTGCTGATTTTCTGCAGGATGAGAGCCAGGAAACCCAAAGAACCTCCTGTGGAAACTGAGTACTCTAATGTCACAAAGGCCAACCGAGTGTATGAGGAgatcagagaggacagacagagcaCATCTCCTCCTGTAGAAGTGTCTACAGTTTACACTTACGCCAAATACACCAAACCAGATGGAGTGGAAACCACAGAGGAGTACAGCTTAGTCACTGCACCCACTTCTCAGAAGAAAACTGAAGACGACCGGAGTGACCTCACCTACTCTGAGCTGCATGTTCCCAACGGTACAGCTGATAACGTGGTCTACTCTGTTCCTCGGGTAGAAGCCAGCTCGGCCGGCAGCCACGCCCAAGACGCTTCCCCTCCTCTGTACTCTACTGTTActttacatcagctgtagctTCAACGCTGTCAGCGCCACATTTACTCTCTCAGGGGCCAACAGGGGACACAAAGTGCTTAGAATGAGTCACATTCACTCAAAGAAATCTGTTTTTATCGTTATTGGGGGAAACCACGTCAGTTACAGCTCACATTATGTTTTTTGAagattaaatgttttcattacC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639201.1 lncRNA upstream 25367 7000551 ~ 7001713 (+) True LOC120558814
XR_005639190.1 lncRNA upstream 33908 6990735 ~ 6993172 (+) False LOC120558806
XR_005639189.1 lncRNA upstream 33908 6991543 ~ 6993172 (+) True LOC120558806
XR_005639187.1 lncRNA upstream 46041 6979556 ~ 6981039 (+) True LOC120558804
TU63509 lncRNA upstream 59409 6963692 ~ 6967671 (+) True G47531
TU63528 lncRNA downstream 28135 7062067 ~ 7063606 (+) True G47543
XR_005639185.1 lncRNA downstream 48949 7082881 ~ 7083074 (+) True LOC120558802
XR_005639186.1 lncRNA downstream 127085 7161017 ~ 7162524 (+) True LOC120558803
TU63546 lncRNA downstream 128477 7162409 ~ 7252252 (+) False LOC120558803
XR_005639195.1 lncRNA downstream 276069 7310001 ~ 7313720 (+) False LOC120558808
XM_039800056.1 mRNA upstream 92532 6869579 ~ 6934548 (+) False LOC120558795
XM_039800057.1 mRNA upstream 92532 6892642 ~ 6934548 (+) False LOC120558795
XM_039800055.1 mRNA upstream 92532 6918234 ~ 6934548 (+) True LOC120558795
XM_039800061.1 mRNA upstream 163132 6855177 ~ 6863948 (+) False LOC120558797
XM_039800047.1 mRNA downstream 3715 7037647 ~ 7066173 (+) True LOC120558791
XM_039799658.1 mRNA downstream 92692 7126624 ~ 7135842 (+) True LOC120558603
XM_039800063.1 mRNA downstream 109856 7143788 ~ 7149386 (+) True LOC120558799
XM_039799659.1 mRNA downstream 138429 7172361 ~ 7180197 (+) True LOC120558604
XM_039800054.1 mRNA downstream 227770 7261702 ~ 7266435 (+) True LOC120558794
TU63466 other upstream 321193 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 826486 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3514596 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3743910 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4256627 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1078509 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1308819 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1308986 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1308986 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1334711 8368643 ~ 8380578 (+) False pkig

Expression Profile