RNA id: XM_039800059.1


Basic Information

Item Value
RNA id XM_039800059.1
length 1174
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120558797
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6855177 ~ 6863948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTTCCTGGTTTACcagtgaagaagaaagagaggcagcGTTAAACCATCAGATCCTCCAACATGAACGTCTGTCAGTCTCTGAtctgcttcttcttcctcaCACTGCAGGATGGAAACATTGGTCTCATCAATGCAGAAATCATCGAGAGTACAGGAACTGAAGGAGGAAACATCACAGTTGGATGCTCCTTCACTTTCTCTGGAAAGAGGAGAATCTTCTGTAAGGACGAATGTAAAGATGGAGACATTCTCATTgagacagaagaggagacagCACAGAGAGGCAGATACGGCATTGAATATAAAAATTCAATAATGTCTGCTACAGTTCTGTATGTGAGCATCACAAAGCTGAATAAGTCTGACTCAGGACGGTATAAATGTCGTTTGGACAGATCTTTATTCCCAGCATCAGACCAGGAGATTGAGATCCGAGTTACAGATGCTCCAACCTCTCCTCTCAGACCTTCTTCACCATCAGTCCCATCAGCCTCCacactgatgacatcacagagTTTAAACTCCACACCTTCATCAGACTCCacactgatgacatcacagagTTTAAGCTCCACACCTTCATCAGACTCCacactgatgacatcacagagTTTAAGCCCCACACCTTCATCAGCCTCCCCTGAAGCCAGCAAGCAGCCtcgacagaaacacacagcacCAGCTGCACCTGCAGCTCCAGATCTCCCCCTggttttgggtgtgtgtgtccctgtggtggtggtggtggtgctggcTGCTGTTCTGCTGTTCTTCTACAAAAAGAGGACTAAGCACTCTGATGGTTCAAACCAAAGAGGAAACACAGACATCACCAGGACTGAGATTAACATCTATGAGAACTGCCCTCCACTCTCCACCCGtgcagacaccacctaccagaGTCTGGATCCAGCCTCCAGGGATCCGGACCGCATCTACTCTACTCTCTCTTAGATACAACACCTATGATGATGTCAGCAAGAGTTTCTGCTGAATGCACAGCGAAGCTTGGCTGCTGCTCATGGCAGTGAAGGATTTTATTACCAACCAGAAGCGTTTCTAGGACTTGAGGAGGTTCAGGACTTAGCCCGGAcccatttaaaggaacacgccgacttattgggactttagcttattcaccgtatcccccagagttagacagagtagaagt

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63469 lncRNA upstream 129979 6722739 ~ 6725198 (+) True G47508
TU63463 lncRNA upstream 133505 6646655 ~ 6721672 (+) False G47504
TU63465 lncRNA upstream 133505 6696577 ~ 6721672 (+) True G47504
TU63461 lncRNA upstream 166463 6632869 ~ 6688714 (+) True G47503
TU63438 lncRNA upstream 427179 6427468 ~ 6427998 (+) True G47482
XR_005639202.1 lncRNA downstream 7745 6871693 ~ 6889136 (+) True LOC120558815
TU63493 lncRNA downstream 10561 6874509 ~ 6875118 (+) True G47522
TU63509 lncRNA downstream 99744 6963692 ~ 6967671 (+) True G47531
XR_005639187.1 lncRNA downstream 115608 6979556 ~ 6981039 (+) True LOC120558804
TU63521 lncRNA downstream 117467 6981415 ~ 7138886 (+) True G47536
XM_039800794.1 mRNA upstream 81075 6729702 ~ 6774102 (+) True cables2b
XM_039801845.1 mRNA upstream 134245 6697993 ~ 6720932 (+) True ccm2l
XM_039802013.1 mRNA upstream 171266 6579186 ~ 6683911 (+) True xkr7
XM_039801741.1 mRNA upstream 352997 6493569 ~ 6502180 (+) True sox18
XM_039801480.1 mRNA upstream 461675 6346255 ~ 6393502 (+) False rgs19
XM_039800056.1 mRNA downstream 5631 6869579 ~ 6934548 (+) False LOC120558795
XM_039800057.1 mRNA downstream 28694 6892642 ~ 6934548 (+) False LOC120558795
XM_039800055.1 mRNA downstream 54286 6918234 ~ 6934548 (+) True LOC120558795
XM_039800048.1 mRNA downstream 163129 7027077 ~ 7066173 (+) False LOC120558791
XM_039800049.1 mRNA downstream 163132 7027080 ~ 7033932 (+) False LOC120558791
TU63466 other upstream 149290 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 654583 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3342693 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3572007 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4084724 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1248493 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1478803 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1478970 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1478970 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1504695 8368643 ~ 8380578 (+) False pkig

Expression Profile