RNA id: XM_039800095.1


Basic Information

Item Value
RNA id XM_039800095.1
length 6157
RNA type mRNA
GC content 0.51
exon number 29
gene id kdm5c
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12590907 ~ 12611168 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGGCTGTGCTTCGGTCGTGAGAAAAAAACTAAGATGGCGTCTCATCAAGAAAGATAGGAATAGGATGGCTTGAAGAGAGTGATGATGTTGGTCGGAAAATGATTGATAGCCACATAATTGATAAGGTTTGAGACTCTCGCTTACAATTAAACGAACCTGTGTGTTTGACACAACGGAGTATATGGAGTACTAAGGCTGAAAAACGGGTCAACTTTGCTAGCCGCGTCAGCTAGCCAACTGGAACAAGCACAGCTGgccaacgttagctaactaccAGTCATCACAACAACAGAGGAAGGAGAACGGCCACCAGCCCTATCATACCCCGGGACATCGAGGTGTCTTCGGGGCAATGGAAGGGGAAGAGTTTATACCTCCTCCGGAGTGTCCCGTATTTGAGCCATCATGGGAGGAGTTTCAGGACCCCCTGGGCTACATCGCCAAGATACGTCCAATCGCGGAGAAATCTGGAATCTGCAAAATTCGTCCTCCACCAGACTGGCAACCCCCGTTTTCAGTGGAGCTGGATACCTTCCGCTTCACACCCCGCATCCAGAGGCTTAATGAGTTGGAGGCAGAGACCAGAGTGAAGCTTAATTATTTGGACCGCATCGCCAGGTTTTGGGAGATCCAGGCATCCTCCTTGAAAATCCCACATATTGAAAGACGCATCCTTGATCTTTTCAGCCTATCAAGGATTGTGACAGATGAAGGAGGTTTTGAGATGATCTGTAAGGAACGGCGCTGGGCTCGTGTGGCCCAGAGGCTTGGCTACCCTCCAGGCAAGAACATTGGTTCTCTGCTGCGCTCGCACTACGAGAGGATCGTCTATCCCTTTGAAATGTTCCAGTCTGGTGCCAGATTGCCGCATTGCAAGCCGAAGCACTATGATGGTGAGGATGTGGATAAGGAGTACAAGCCCCACTCCATCCCTCTGCGACAGTCTGTGCAGCCATCCAAAATAAGCAGTTACGGACGCAGGGCCAACCGCGGCCAGCCTGATGGTCCAGAGGATCTGGCCCCCCATCCTCTCACCACTGGTTCTCAACTCATCTCTGCGCCTGAACCCACAGAGGAAGACATAGAGAAGAACCCAGAACTGAAGAAGCTACAGATCTATGGCGCAGGGCCTAAGATGATGGGACTTGGGCTGGTGGCCAGGGACAAAGGCATCCGGAAGAAAGATGAACTGCCTCAAACCGTTACCATCAAGGACAGCGTATCTCCTGGTTCTGGTGATACGTCAGTCAAAGCGGAGCCGCTGGAGCATAAAGAGAAGCAGAGTGATGGGAGTACATCTAGCCATATACTGCCTCCTCCTACCATCACAGTTAAGACAGAAGTGAAGAAAGAAGAACCAGAGGAAGAGGGTGGGAAAGGgaaagtggaggaggaagaagataCAGATGGACCTTGTACCAAAATGACCATGAGGCTAAGACGCAACCTCGGCAACTCGCAGTGTGTGGATTCTTTTGTATGTCGGATGTGTGGTCGGGGAGATGACGACGAGAAGCTCTTGCTGTGTGATGGCTGTGATGATAATTACCACACCTACTGTCTACTACCCCCACTCACTGATCCTCCAAAAGGCAACTGGCGATGCCCTAAGTGTGTGGCAGAGGAGTGCAAGAAACCTGCAGAAGCATTTGGCTTTGAACAGGCTACACGAGAGTACACTCTGCAGAGTTTTGGGGAAATGGCAGATGCCTTCAAGGCAGATTACTTCAACATGCCTGTCCATATGGTTCCCACTGAGCTTGTGGAGAGAGAATTCTGGAGGTTAGTCAGTAGTATCGAGGAAGACGTGGTTGTTGAATACGGTGCAGACATACACTCCAAGGAGTTTGGCAGCGGCTTCCCGATGAACAATGGCAAAAAGAAGCTCacaaaggaggaggagGAATATGCCTGCAGTGGCTGGAATTTGAATGTGATGCCCGTGCTGGAGCAGTCACTCCTGTGTCACATTAATGGAGACATCTCTGGGATGAAGGTGCCCTGGCTTTACGTAGGCATGGTGTTCTCAGCTTTCTGCTGGCACATCGAGGATCACTGGAGCTACTCCATCAACTACCTGCACTGGGGGGAACCCAAGACTTGGTATGGGGTTCCCTCTGTGGCAGCTGAGCGACTTGAGGAAGTAATGAAGAAGCTGACGCCAGAGCTGTTTGAGTTTCAACCTGACCTCCTGCACCAGCTGGTCACCATCATGAACCCCAATATCCTCATGTCTCACGGTGTACCGGTTGTACGTACCAACCAGTGTGCTGGGGAGTTTGTCATCACCTTCCCCAGAGCCTACCACAGTGGCTTCAATCAGGGGTATAACTTTGCTGAAGCTGTTAACTTCTGCACTGCAGACTGGCTGCCTGCCGGCCGTTCCTGTATTGAGCACTACCGGCGTCTGAGAAGGTATTGCGTGTTCTCCCACGAGGAGCTCACCTGTAAAATGGCTGCCACCCCAGAGAAACTAGACCTTAACCTGGCAGCAGCTACACACCGGGAAATGTTCATCATTGttcaggaggagaggaagctGCGGAAGGGTCTGATGGAAAGGGGCATTACTGAAGCAGAGCGCGAGGCCTTTGAGCTGCTGCCTGATGATGAGAGACAGTGTGATAAATGTAAGACCACGTGCTTCCTTTCTGCCCTGGCATGCTCAAACTGTCCAGAGAGACTGGTATGTCTCTACCACACTCAGGATCTGTGCAACTGCCCCACTGAAAAACTCTACCTCAGATACAGATATACCCTGGATGAGCTGTTAGCCATGTTACACCGATTAAAGGTTCGGTCGGAGTCTTTTGATTCCTGGGCCAACAGAGTGAAAGAGGCACTTGAGCAGGAAGAGGGAAACAAAATAGGAATTAATGACCTGGAAATGCTGAAGACGGAAGCAGCGGAAAAAAAGTTTCCTGACAACGAACTTCTGCGGAAACTCAACACTGTTCTTAAAGACATCGAACGCTGCCAGCAGACAAGTGTTGAACTCCTCAGTAACTCAAGGACCAGTGAAAGTAAGATGACGTTGGCAGAGCTGAAATCCTTGGTAGAGACGATGCAAAACCTGCCCTGTGTGATCAGCCAGTTGGAGGAAGTGCAGGCGGTTCTGCGGACAGTGGAGGATTTCCAGAGCCGGGCTCAAGTACTGGCCAATGACAGGGACTGGAGGAGGGACTCTCAAACACCTGAGCAGTTGCAGACTTTGTTGGAGCAGGGGGCCAAGCTGCTTGTTGTGGTGCCAGAGTATAATTTACTCCAGGGCCTTAAGGAGCAGGGCCATTGGCTGGCAGAGGTGAGACGCACCCTGGGCACAGAAGGAGGGGAGAGGCAGGAGGTGATGTTGGATGTTTTGAGAAACCTGATGGAAGCCGGCTGCAACGTGCCCCAGAGTGTGTCTGTGGAGACGGCCATGGCAGAGCTTCAGGAGCTGCTCACAATTGCAGAACGTTGGGAGGAGAAAGCACAGATCTGCCTAGAACAAAGGCAAAAGCACCCTCTTTCTACTCTGGAGGCAATAGTAAATGAAGCCCAGCTGATTCCAGTCAAGCTGCCCAACATTCTGGCTCTACAGGGCTGCCTCACTCGGGCACGGGCCTGGGTAACAGATCTAGAGGAAATCCagaATGGGGAGCATTACCCATGCCTGGATGACCTAGAGGGCCTGGTGGCTATTGGAAGGGACTTGCCAGTCTTCATGCAGGAGTTAAGACAGCTGGAACTGCAGGTAGCCAGCGCTCACTCTTGGAGGGACAAGGCCACCAAGACCTTCCTGAAGAAGAGCAGTCAGCACAGTCTGCTAGAGGTATTATGTCCGTGtgcaaagagaagagagagccgAGATGAGATGGAGACGTTAGATGAGCCTTTAGATGATTCTGATACCAACACTCTGGGCCTCTCTGCTCAGGACCTGAGGGACCCTGCCGCTATTGTGATGGCATTCAAAGAAGGGGAGCACCAGGAGAAGGAGGCACTACTGAGGTTACAGAAATTGAACATGTGTAAATCTGGACTTAACGCTGCAAGTTGCAAGGAGAACGGGAGGTGGGAGGATGCCATGGAGACGGACACATCCATCCACTCAGAGAACTCTGTAAAAGAGAACGGTAACAGTAACCACACCTGCACCACCCCTCCTCAGTCAGTGTGCGTGTGCGCTGGTCAGCCTCGTGCCCCTCAGCTTCGCTGTCATCTGTGTAAGGACTGGTTCCATGGGGGCTGTGTTCCTTTCccctccctgctctcctcctctgGACCACCAGAGAACCCCCTCTGCTGGTGGGACTGGGACTCGCGCTTTTTGTGTCCGCGGTGCCAGCGGTCACGGCGCCCACGCCTGGAGACTATCCTGGCATTACTGGTTGCCCTGCAGAGGCTACCAGTGCGTCTGCCTGAAGGAGAAGCGCTGCAGTGTCTCACAGAGAGGGCCATCACCTGGCAGGGCCGAGCCAAGGAGGCCCTGGAGACGCCAGAGCTGCAGCAGACACTTCAGAGGCTGCAAGAACTCAAAGAGACTCTCCATTGTGAAACGGAGAAAGCAGGAGACATGGGAAAGGAGACAGAAGGGAGTTCAGTGATTGTCTTATCAGACTCTGAGGGaggtgagggagaggaaggAGTCATTGATCTGACAGACGAGAATTCACCTAAAAAGAACACCAAGGAAAGCAACGGCACTCAGGCTGGATGTGAAAATGGCATCAGCAAGAAGTCAAATGTTACAGGGGTGGGGTCTTTGCTGCCCCTGCTGCCTTTGCTGAAAGGCCAGGTAGTGGAGCTTTTACCAGCCACCAGGGTCcagctggaggagctgcagctggAAGGAGATCTGCTAGAGGTGTCCTTGGACCAGACACTCATCATCCACAGAGTCCTGCAAGCTGCCTCTGTTCCACCCAGAGAAACACTGCACACGCTTATTCAGatcgAGCTTGAAGAGCAGAGACGAACGAGCCGCGGACGAGCCAAGGACTCCAAAAGGAAGCGAAAGAGCCACCGAGGCGGCAGTGGGGAAGGGGCGGGAGAAAGGTCTCTGGATGCCTCGGAGTCAAAGAAAACCTGTCCCAtcagccacagcctgtcccCTCAGTTACCTGTCCAGACCTATCCACAGATTTTGTGATATATTCAACGCTGTAGCTCTGTTTAAGCGGATTGGCCGGAGGAATTGAAGGGACAGAGCATTCTGTGCCAGAAGACAGTGTCAAGTTCTAACAAGACGCAGGACTTCCCCAGGCCTGTGTCCTACGTCCCTTCTCATCCCTCATTCACACATTCAGACACTAACCGTGCGATGACTCTTCTTCTACACTCCACCGTCTCATCCTAAACTCAGCCATATCTCACCCgtcatgatttttattttatttttcttcagacTCGCTGTCTTAACCAAACTTtattctcctcctcccctgGACCCATTTTTGTCCTGTGAACATGGTAAGACTGTGTTGAACCGATGTGGGACTTGCCGCAGTAGGAGTGTTTTTGGTCTAGAGTTGTCTCTGAGGTCAATCAGTATGCTACGTTATCCCCACCGTATTAAATGTTAGTTCAGCTGAAGCCTGTCTCAGCACCAGCTGTTGCAGTTTCACTTCACTTGAGCCCACTCGTTGAAGTTGGATAAGCTATGGAGTTCATTTAGACCGTTGTATTCGGGCATGAATCCTGAACCTGAGGTACAGCCGAGGGTTTTGACTGCTGATCTTAGACTACAGCACCGTggttccactttttttttagttgTATTGAATCTTGTGTTTGATGCTGTTTTGAGGGGACATGCATTTTGAATAAACTGAGTAGATTTTGGGAAGTGTTAAAAACAAGCATTAATGTTTTTGGTGCTACTTTCCCAAAATGGATATCTGTACCTCTTTGGCTTGTTTCTCCGCCCTTCCCTCGAtgcctttattttctttttctttttttttttaaaagcgcTCATCCTTTTGACTCCATATTGTATTCCTTTTCAATTTTTCCCTCTTTTCCCTCTCCCTCATTCTCTTGCAAATTAAGGTAACTTCACTGTATCTCACTTTGtcacaatttattttgttaaaatatgGGTGGGTAAAAATATTATTGATATTGCAGACACACAGTTGTCGTGAGTTTCTGTATAAACTTATCATTTTAA

Function

GO: NA

KEGG:

id description
K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65712 lncRNA upstream 79329 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 114882 12474087 ~ 12476025 (+) True G49223
TU65700 lncRNA upstream 118635 12470450 ~ 12472272 (+) True G49221
TU65626 lncRNA upstream 226466 12364093 ~ 12364441 (+) True G49157
TU65598 lncRNA upstream 287504 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65749 lncRNA downstream 49259 12660427 ~ 12661371 (+) True G49241
TU65816 lncRNA downstream 63174 12674342 ~ 12677678 (+) True G49301
XR_005639364.1 lncRNA downstream 115432 12726600 ~ 12732417 (+) True LOC120559802
TU65847 lncRNA downstream 169447 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 217413 12828581 ~ 12840565 (+) True G49330
XM_039800152.1 mRNA upstream 3539 12561811 ~ 12587368 (+) True iqsec2b
XM_039800154.1 mRNA upstream 3539 12561811 ~ 12587368 (+) False iqsec2b
XM_039800024.1 mRNA upstream 34535 12513254 ~ 12556372 (+) True LOC120558783
XM_039800026.1 mRNA upstream 35955 12513254 ~ 12554952 (+) False LOC120558783
XM_039800027.1 mRNA upstream 36013 12513254 ~ 12554894 (+) False LOC120558783
XM_039801969.1 mRNA downstream 35368 12646536 ~ 12650775 (+) True LOC120559891
XM_039801970.1 mRNA downstream 35368 12646536 ~ 12650775 (+) False LOC120559891
XM_039799238.1 mRNA downstream 41216 12652384 ~ 12658308 (+) False LOC120558314
XM_039799239.1 mRNA downstream 41216 12652384 ~ 12658308 (+) False LOC120558314
XM_039799237.1 mRNA downstream 41443 12652611 ~ 12658308 (+) True LOC120558314
TU65687 other upstream 132468 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 367269 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 380498 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 494070 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 1274915 11314662 ~ 11315992 (+) True G48765
XR_005639089.1 other downstream 41442 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 249553 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 921222 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1501882 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1502100 14113268 ~ 14121022 (+) False hmga1a

Expression Profile