RNA id: XM_039800213.1


Basic Information

Item Value
RNA id XM_039800213.1
length 4326
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC120558885
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20100912 ~ 20119745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGCCCCTCCCTTCACTTTGCACCTTCATGTGAACTCTCTTCGGCCACACCTAGACGGGGCGCGGTCCCGAGGGTGGAGTTCACCGCCTCTACTCTGGGAACTTTAGCCTACATTATTGGCACTGTCCGCTGCTCTAATCGAGCTAAGTCGAGCCGTACTTCTCCTCCGGGTCTGCACTTTATTTGGAAACTGGTTTTAACCGAACCGTTCACGGGAAGGGCACCGTGCTGGGAAGATGATGGCTCCGGAGCCGCTGCGTTCAGCAATGACTAGTAAGGGCAGGGAGGATACGTCGCTCGCGTTGCCCTCCGACAACAAGCTGCACTCGGGACAGCAGCGCGTGCTGCATCAAGTGCACACTATCGAGAGGAGCAAGTCCAAACACGGGAAGAACGGCTCAACATCACCCTCACCAACAAGCCTGTCTCCCCAGACTTTGACAACATATGAGTTTGGAACATTCAAGTTTTCTCCATCCAAAGCAAATGGCACCTTCAGTCGTACCAGCTCCAATCTGTCAACAGGCTACAACAAATCGGTAAATACTCAGAAGAGTCGTACCCTATCCGCTAGGACCACGAGAGGAAGACAAGTCAGCTCAGGCATATGGGAACAGCAAATCAACACTTCCAGCTGGCCCCAGGGTACCAATGGGCTGAGATCTGCTCGCAGTGACCCATCTTTGGCTCGTCCATTTTCTGCAACCACTATGcgaGGCAAAGGGATGTTGGCTCAGGGCCAGCAAAGCCTTCAGAGTCGGATAAATAGAAACAGCATCTATTCTGTGACCAACGGCACACAGATGACCAACAGCCAGACACGCATCGTCCGGCCGCCCACTGCCCTGTATCGCACTGAGGGCAAAATGGGCACCATCAAAACATCCAACATAGAGCAGCAATCAGCGGTGAACAGTGCGATAAACATGTCAGATATGACCCTAAAGGAGGCTGTAGAGTTCCTGTCTCACCCTGAAGAGAATTACCAGCAATGTGGAGCCACCTTCATCCACCACACCACCTTCAAAGAGGACGGCGCCAAACAGGAGGTTTTCCAACTAGGAGGTATCCCCGCTCTGGTAACCCTGCTGCGGAGCCCCAATCCTGGGGTGAGCCAGGCTGCTGCTGGGGCTCTGAGGAACCTGGTGTTCAAAGACCAGGACAACAAGCTGGAGGTTCAGCACTGTGGCGGTATAGCCAAGGCCCTGCAGCTACTTAAGGAGACAAATTCTACTGAGACCCAGAAACAAATCACTGGCCTTCTATGGAACCTGTCCTCTGCCGATGAGCTGAAGTCAGAACTTATAGCTACAGCGCTGCCTGCCCTGACTGAGAATGTGGTGGTGCCATTCACCTGCTGGTCAGACAACAGCGCCAACAACAACATACACCCCGATGTCTTCAACAGCGCCACAGGGTGCCTGCGGAACCTGAGCTGCGGCCAACAGAAGGAGAGACAGGCAATGAGACAGTGCCGTGGCCTCATTGACTCCCTCATGGGTTATGTCGAGTCCTGTGTGGCGGAGGAAAGCCCTGATGACAAGtCTGTGGAGAACTGTGCATGTATCCTCCATAATTTGACCTACCAACTGGAGGATGAGTCTCCTGAGTGCTTCAGCAAGTTccaacctgagagagagggccAACGTGGGAAAAGTAAAAGCCCCACGATTGGATGCTTCAGCCCAAAGAGCAGCAAGGCTCAAAAGGAGTTTTTATTTGACGCGGTGCGGGGAATGCCGGAGGACAGCAAACCATCAGGTGTGAAGTGGTTGTGCCATCCCATAGCCATGCAGACCTACCTGTCTCTGCTGGGCTCGTCCCAGAACGGTGCCACACTGGAAGCCTGCTGTGGTGCCCTGCAGAACCTCACTGCCGGCAAGGGACTGGGGTCCAGTGCCATGTGTCAGATTCTGGTTCAAAAGCTGGGGGCTCTGCTGCACATGCCCCGTCTTTTAAAGTCTCCTAACCGGAGCCTGCAGAAGACTGCCATGTCCCTTCTGGGTAACATGTCTCGGACCAGCAGTTTGCAGACCTCCATGGCAAAGCAGATTCTGCCTGATCTCACCAGCCTTGTCTCCTCTGGCCCCCGAGAGATGGGAAGCTCTGACGAAACTATAGCAACAGCATGCAGCACATTGCGGAGTCTGATGTTGGCAGACACTGAGGTCAGCAAGAAGTTCGTCAAAATTGAACTGGTGTCATCAGTGGCTGACCTCAGCGAGAACAGGTCTTTCCCCAAAGGCAGCAAAGCAGCTTCCTTGCTCCTCTACAGCTTATGGAACGATAAGAATTTGCAAGGAGTAGCGAAAAAGCTGGGGATGGCCAAATCACTTTTTGTCAATGACAACACCACAGCTATGCACAGGTCGGTGAAAGTTATCGAGTGAGTGTGAAGGACGAGTGGAAAGGCACCACAGAGCCTGAGAGaTGGGATCCAGCATGTTTAGACACTGATGTGGCCACACCCTTGCAACGAGGAGAGTAAAATTACATTCTTTACATAATAACCTTGTTGACAGAGCCTATTAATTAAGAGTCAATCATACATTGTATATACTTTAGTGCAAAGAGAGCTTTTAATTTCATGAGTAAtcctgcagtgtttcatttgaaTATGTTTTGTCTGTGAATAGAAAGTGGTAAAGTATGCATGTGCTGAATCCCAGTTCTTCTGGCCTGACAGCTGCAATACACCAGGCAATGTAATCTGCAGTGAAAGTTATTTAAGGCATgcagtgattatttacattcaTGAATGGCATTGTTGTCAGATTTGTCTGTCTGCAGTGGCTAAATGATAAAATATCTTGTGTGGCCTTGAGAATTGAGCAGACAAAAATTTAagtaataagaaaaatatatgaaaagctaaaaaaaaaaaaaaaaaagacttatttTGTAATACTGTCACTACCAGATCAAATCTCATACATCCAgttgagatttcttttttttttttttactttgctgtTTGCTGTTTCATTCTGTGAGTCAGAATGTTGTATTGCAAACAATTAACATAAACCACTTTCAACAAGAGTGCCTAAATAGTTAAAGAAATAGTtccacattttgggaaatacgcttgtTCGCTTTCCCACAGAGAGttgatgagaagatcgataccactctcgtgTCTGCACATTGAATATGAAGCTGcaaccagcagccagttagcctagcttagcacaaagactggaaacggggaaatggctagcctggctctgtccaaaggaaacaaaatccacttaccagcacctctaaagctcaacAATTAACACTTCATATGTCGTTTGTTTAATCCCTAGTGTTAAAACAACACTTAGTGGTTTTACAGGGTTTTGGGACCAGCAAAACAACAATGTGTCATTTCTACACTTTAGTTTTTGTGTGGATTatacaaacaagatataaagtGTTCAGAAGGAGAAAtatgttacctttggacagagccagactagctgtttccagtctttgtgctaaaatAAGCTGACCAGCTGCTGGCAGTAGCTTCATATTAATCGGGCAGAAACAAGAGCGGTGTCGATTTGTCACTTACCACCGAACGAGAAAGTGAAGAAGTCAAAATATTCTATAGTATAAGTGCAGTACTAAAAgccttgtttttttctcttgctTTGTCCTAAATCTGCTTTTTGAATGTTACACATTGTAtgctatacagtatattcttttattagtttgtttttaattattgtttgttttcttgcATAAACTGAAGAATTGGAGACAGAAGTATTGGAATATAGTACACAACATGCAAAATCAGCTGTCCCCATTCATGTATTAACAATGTATAGAAAATTGGAGCATTATAAATAGTCAGTGATTCCCCATGAAACCTTTTTTAGTCTAATTTGAACATttgtttaatattattaattatacatgtttttatttaaaataaatggttcTTCATCTAAAACCTTTTATAGGTATTTGTATTAAAAGTTTTAAGGGCTCATTAAAGAGTATCTGCTCTCATAATCAAACTACTGAAAACTGGTTAAATCTTCCTCAAATTCCAATGCTTTTTGAAGACCCAGCATTACAAATCACTGAAGCGAAGAGAGGAGATGTTTGGAATCTGTGGAGATTCCCCATGACTAACAATACACTGCAGTGGAGtggactgtttttttgttttttttacgctTGAGACATATATTCCTGCTAAGGTTCACTTGCCTCCAGGAAGACAGTATTGCTTAGAATGtagagaaatgtgtgtgtgacattttaTAAGCTTTTCCTGTCACTCAGTCTGTACAAAGAATAAATAACAGATATGACGACAACA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K10387 PKP1; plakophilin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68552 lncRNA upstream 36569 20063992 ~ 20064343 (+) False LOC120558901
TU68535 lncRNA upstream 104796 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 108719 19990773 ~ 19992193 (+) True G51282
TU68451 lncRNA upstream 295619 19778068 ~ 19805293 (+) True G51221
TU68592 lncRNA downstream 38044 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA downstream 41674 20161419 ~ 20165215 (+) True G51317
TU68645 lncRNA downstream 326498 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 541552 20661297 ~ 20662553 (+) True LOC120558477
TU68681 lncRNA downstream 631850 20751595 ~ 20752345 (+) True G51386
XM_039800226.1 mRNA upstream 5311 20080289 ~ 20095601 (+) True tead3a
XM_039800230.1 mRNA upstream 6803 20079273 ~ 20094109 (+) False tead3a
XM_039800231.1 mRNA upstream 6803 20079526 ~ 20094109 (+) False tead3a
XM_039800228.1 mRNA upstream 6803 20080152 ~ 20094109 (+) False tead3a
XM_039800229.1 mRNA upstream 6803 20080289 ~ 20094109 (+) False tead3a
XM_039800193.1 mRNA downstream 54412 20174157 ~ 20271307 (+) False LOC120558875
XM_039800191.1 mRNA downstream 59215 20178960 ~ 20271307 (+) False LOC120558875
XM_039800197.1 mRNA downstream 59215 20178960 ~ 20271307 (+) False LOC120558875
XM_039800194.1 mRNA downstream 59215 20178960 ~ 20271307 (+) False LOC120558875
XM_039800195.1 mRNA downstream 59215 20178960 ~ 20271307 (+) False LOC120558875
TU68517 other upstream 100474 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other upstream 100474 19996511 ~ 20000438 (+) False zgc:194242
TU68439 other upstream 332348 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 638798 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1371361 18729480 ~ 18729551 (+) True trnaa-ugc_5
unassigned_transcript_228 other downstream 201766 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 205424 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 326498 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 1169843 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 1241545 21361290 ~ 21363640 (+) False G51734

Expression Profile