RNA id: XM_039800226.1


Basic Information

Item Value
RNA id XM_039800226.1
length 2892
RNA type mRNA
GC content 0.44
exon number 14
gene id tead3a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20079273 ~ 20095601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAATCTGCTTTAATGGCTAAaaatagacacacggctaaaaacaaggacaacaaagctgaacaAGGTGTGTCGTGGCCAGGAGCCGTCATCATTGCTTCGGAGTGGAGTTGCCGTAGCAGCCCTGACGGGGCGCAGGAGGAGGGTGGCGATGGGGAAGGAGCGGGAGACGGGCCGGACCGTGGATTGGACGGCGACCCTGAGGGAGTGTGGAGTCCAGACATTGAGCAGAGCTTTCATGAAGCTCTGGCCATCTACCCTCCCTGCGGCAGGAGGAAGATCATACTTTCAGACGAGGGCAAGATGTATGGTCGAAATGAACTGATAGCTCGCTATATCAAGCTACGAACGGGGAAGACGCGCACACGCAAACAGGTGTCTAGTCACATTCAGGTTCTGGCACGTAAGAGGGTACGAGAATACCAGACCAGCATCAAGGCCATGAACTTGGACCAGGTATCCAAAGACAAGGCACTGCAGACAGTAGCCAACCTCTCATCAGCTCAGATTGTGTCTGCTAGTGTAATGAAACCCCAGACTCAGTTCCCTCCACCAGTcagaTTTTGGCCCGGTCCTATGCCAGGACAGCCTGGACATTCTCAGGACATCAAGCCCTTTGCACAGCCACCATACACTACACTACCAGCCCCTGTCCCTGCACCTATCAGCTATGAGCCCCTGCCTCCACCTCGCTCCGCAGCTATAGCAGCTCCTGTATGGCAAGACAGAACCATCGCCTCAGCAAAACTACGGCTACTGGAGTACTCTGCTTTTATGGAGATCCAAAGGGACAGGGAAACGTATAAGCATCTTTTCGTACTCATTGGCCCATCGAACCCGGGCTACAATGATCCCGTATTGGAGTCCATAGATGTGAGGCAGATTTACGACAAGTTCTCTGAGAAGAAAGGAGGCCTGAAGGAGCTGTATGAAAAAGGGCCGCACAACGCATTCTTCCTCGTCAAGTTCTGGGCGGACCTGAGCAGTGACATTGAGGAGGGCTCTGGTGTGTTCTACGGTGTGAGCAGCCAGTACAGTGGAACAGAAAACATCACAATCAGTGTCTCAACTAAGGTCTGCTCCTTTGGCAAACAGGTGGTCGAGAAGGTTGAGACAGAATATGCACACATGGAAGGGGGAAAGTATGTGTTCCGCATCCATCGTTCGCCCATGTGTGAATATATGATCAACTTCATCCACAAGCTCAAACACCTGCCAGAGAAATACATGATGAACAGTGTACTGGAGAACTTCACTATCCTACAgGTGGTGTCCAACAGAGAAACTCAGGAGACTCTGCTGTGCATTGCCTTTGTGTTTGAAGTGTCCACTAGTGAACATGGAGCGCAGTACCATGTTTATCGACTAGTTAACGACTAGCAGCACGTCGCGTGCATGCAGAGACTCTTCACAGACTTTTTGATACATACAGCATAAACACTATTTTCAGCTCAAACACACAGAATCCCCACTTTTCTACTCTAAACACACACTTGTTTTAACAGACCCAATAGTCACAGTATAGtcacacttgtttttttttttaatgtgtatgCATTTTCATTGCTGCAAACTATGCCCACATTTCTTAACAGCCCATGACTTAAACACTAAGGTAATGTTAATTTTTGTAGATTTCGACCAAAACGTGGCGTAATTATCAGGAAGTGCTGTGATGTTATCCAACGTTATTATTCAGTCACATAAACATCAAAATATCGGAGTTGACACAATGCCAATAACTTGTACAGTTTGTAGTATCTCTGTAAGGTAGGAACTGAATGAGCCTATAATGGTGTATCCTCTATCACTGCTTAGTGTGGAACCACAATCTCCACGTTTAATCAAACCTTTTAGGATCACAGGAAGTATGAGCGTGCCTCTTCCCAGAATACAATGCACTACATGTAAAGACGTAAAAGtcgtatttatattttaaacgcATTGTCAAAGTGTAAAGAGAGCCATCTTTTTACAGTAGGTGTATTTGCCGTTTTGAAGGTTTCCAGTGAAGCAGCGTGTGGACGGGGAAGATCTTTTGATCAAATGTCAAGGAGGAAGTTTGGCTCACTTGTCTTTGAAAACATAATAGTTAACAACCAGTTTTAGATTCAGTTTACACTTTGGTGTCAGCAGCATTTTGAATGAAATAATTATCTTTTACTGTTAATTTACACAATACTGTTTTTACTCTGACTGCGTGGGCTCGCTGCAGTATTTCTACCTCCACGTGAGTTGGGAAAAGAATGTGCTTTGGTTCATAAAGCCTTAACCTGAAGAGCACTGATGTATAGGACATGTACACTACATTTGTAATGGTACTGTTTATAAGCCAAAACAAGCTAATACGTTTTTGTAAAGATGAactatcttttttttgtattttaccaGCACAGCTAGAAGTGTTACTCTAAACATCAGCAAATGATGATCTTTTTCGATGTATGCAAAATGATGTATGGTACAGACCACACTAAGGTCACCTACAGTGCACTGGGTAGATTTGTGTCTGATAACACTAACAAATTATCCAGCCTACCcttgcttttatttcttttgttctATGTAATGTTTTTGGTTTCTGGTACACGTTGCTACcagcattttttttatagtaaaTGTTATTTGACTATTATGCCCTTTCATGGCAGGATTATCTTTAACCATGTGGAAGGTGACAATGATTTGTCTTGATTGTGAAAGTAAAAGGCAACTGGTTCAATTTTAAATAACCATATTCACTGTGTGGTCAGCCACAAttcttattcttttatttttcccaTCAGTGTCTGGTTGGCTGTGCCTCATCACTCCTTTGGTCAAGTCTGCTCAGTGAATTATATCTGTGCCTTTATGCTGTACCAATAAAATCACATGGTGTTTGCAGAATCA

Function

GO: NA

KEGG:

id description
K09448 TEAD; transcriptional enhancer factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68552 lncRNA upstream 15946 20063992 ~ 20064343 (+) False LOC120558901
TU68535 lncRNA upstream 84173 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 88096 19990773 ~ 19992193 (+) True G51282
TU68451 lncRNA upstream 274996 19778068 ~ 19805293 (+) True G51221
TU68592 lncRNA downstream 62188 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA downstream 65818 20161419 ~ 20165215 (+) True G51317
TU68645 lncRNA downstream 350642 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 565696 20661297 ~ 20662553 (+) True LOC120558477
TU68681 lncRNA downstream 655994 20751595 ~ 20752345 (+) True G51386
XM_039800240.1 mRNA upstream 14554 20063994 ~ 20065735 (+) True LOC120558901
XM_039800272.1 mRNA upstream 18477 20059114 ~ 20061812 (+) True LOC120558918
XM_039800266.1 mRNA upstream 76177 20001149 ~ 20004112 (+) True ube2t
XM_039800265.1 mRNA upstream 76177 20001151 ~ 20004112 (+) False ube2t
XM_039800255.1 mRNA upstream 79977 19997204 ~ 20000312 (+) False zgc:194242
XM_039800213.1 mRNA downstream 5311 20100912 ~ 20119745 (+) True LOC120558885
XM_039800193.1 mRNA downstream 78556 20174157 ~ 20271307 (+) False LOC120558875
XM_039800191.1 mRNA downstream 83359 20178960 ~ 20271307 (+) False LOC120558875
XM_039800197.1 mRNA downstream 83359 20178960 ~ 20271307 (+) False LOC120558875
XM_039800194.1 mRNA downstream 83359 20178960 ~ 20271307 (+) False LOC120558875
TU68517 other upstream 79851 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other upstream 79851 19996511 ~ 20000438 (+) False zgc:194242
TU68439 other upstream 311725 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 618175 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1350738 18729480 ~ 18729551 (+) True trnaa-ugc_5
unassigned_transcript_228 other downstream 225910 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 229568 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 350642 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 1193987 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 1265689 21361290 ~ 21363640 (+) False G51734

Expression Profile