RNA id: XM_039800273.1


Basic Information

Item Value
RNA id XM_039800273.1
length 631
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120558919
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19792180 ~ 19793225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACACCCTTGATCTTTTCAGATATTCACAAAGGAGAGGAACAGGGCAGAATTGGGGAACTGAGAGGACACAACGAGAGGAAGAATCCAGACACATAAAGATCATCTCATTTGAAAAAGAGAGCACAGATTTATTGGATTATTAGATTGGATTGGAACTGAAATAACTTAATCTGCAATCAAATCTTTCACACTTAAATGCATATTGTCGTCATTGGGCATCTCTGTAGGCCTAATTGCATGAACGACATAATGTCAagCATGGGTTTGTTAGTGGTGAAATGCATGCTGCTGTGTGCATTGATGCATGGAGCGGTGTGTGCCTGTATGCTGAAGAATCACACCATATGGATTGAGAGGCACGACTGTGGCCAGTGTGTGGCCATCAACACTACCATCTGCAGCGGCTACTGTTACACACAGGACACCAATTTGAGGGGACGGCTTGGGAGGAGTTTCCTGATCCAGCGCAGCTGTGTGCCTCTGTCCTTGGTGTACCGAGCTGCCCATGTGCCAGGCTGCCCTCAGGATGTCAGCCCTCAGCTGTTTTATCCTGCGGCCAACCGCTGCAGCTGCAGGCGCTGCAACACGCGCACACATCACTGGTGCTCGCAACAGCCGGATCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68438 lncRNA upstream 29701 19762177 ~ 19762479 (+) True G51218
TU68435 lncRNA upstream 72743 19716772 ~ 19719437 (+) True G51215
TU68432 lncRNA upstream 77501 19712766 ~ 19714679 (+) True G51212
TU68425 lncRNA upstream 84680 19702830 ~ 19707500 (+) False G51206
TU68423 lncRNA upstream 87543 19702097 ~ 19704637 (+) True G51206
TU68442 lncRNA downstream 839 19794064 ~ 19797376 (+) False G51220
TU68534 lncRNA downstream 197548 19990773 ~ 19992193 (+) True G51282
TU68535 lncRNA downstream 202656 19995881 ~ 19996116 (+) True G51283
TU68552 lncRNA downstream 270767 20063992 ~ 20064343 (+) False LOC120558901
TU68592 lncRNA downstream 364564 20157789 ~ 20171119 (+) False G51317
XM_039800274.1 mRNA upstream 23622 19767626 ~ 19768558 (+) True LOC120558920
XM_039800317.1 mRNA upstream 328468 19456477 ~ 19463712 (+) True LOC120558947
XM_039800962.1 mRNA upstream 376990 19366783 ~ 19415190 (+) False wnt5a
XM_039800220.1 mRNA downstream 126169 19919394 ~ 19925436 (+) True LOC120558889
XM_039800223.1 mRNA downstream 148799 19942024 ~ 19951021 (+) False kcna2b
XM_039800225.1 mRNA downstream 148799 19942024 ~ 19951021 (+) False kcna2b
XM_039800224.1 mRNA downstream 149059 19942284 ~ 19951021 (+) True kcna2b
XM_039800216.1 mRNA downstream 179978 19973203 ~ 19976195 (+) True LOC120558887
TU68439 other upstream 23616 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 330066 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1062629 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 1105878 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 2019596 17741460 ~ 17772584 (+) False LOC120559485
TU68517 other downstream 203286 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 203286 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 528286 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 531944 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 653018 20446243 ~ 20532462 (+) False LOC120559772

Expression Profile