RNA id: XM_039800288.1


Basic Information

Item Value
RNA id XM_039800288.1
length 2123
RNA type mRNA
GC content 0.46
exon number 4
gene id nfe2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20745555 ~ 20750691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggTGTGCATTTGACAAGTGaatacattaaaaatgtattcagtGTTCACCTCTCTGTTGGGGTTTAAGCCACGGTTTCATTTGTGTTTTGAAAACCTTAAATTCGGAAATACAAGTTGGAGATGCTAAaacttaaaagaaaataaataatggcTACTGTGAGAGCTTAACCAAAAGAGTTTAAAGATTACTGCCAACATGTTAGGCACAGGCCTACACCAAATTTTTCAAAGCAGCCACTGGCCCCAGTGTGTCTTGTAGAGAGCACTGTTTTCCCGCAGATTGTCTTATCAGGGGTCGGCATAGCTGCACTCGGGACAGCTGTTGGGAGGAGTCAACTCAACTGAACCCTTCATGTGCTCCAAAAGAACctacacaacacattaacagtcATTTATTTAGCACCAACAGGTCTACAGAtatgtaatgtactGTTAATCTTTTGCAGAAAGAGCCTCTCCTGAATGTGTTCAACAGCCAACTATGTTCTCCCTCTGAGGAGAACCTGTGAGGTATTAGCCACTCCAGGCAGGCTGTGTGGTGGAGTGTCCATGTCAACTAATTTCCCTGGAGCCAGATCTCATGGAGCTCCTCAGGACACAGAGATGGATGTGGCTTGGCAGGAGCTGATGGCCATCACAGAGCTGCAGgAGTTTGAAGTCCCCAGTGAAGGCTCCTATGAAACCACACAGTACCAAACCATGGAGCCCATGGTCCCTATGGGAGGATACGGGATGGCTCAGTCCCATTCTGAGCCTACTCCTGCTGCTTGTGAGCTCGGTACCGCTGACACTTATGACGGATGTTACTCTGAAGAAGTGCCTGTCTGTCATCGCCTAGGCAGCAACGCAGAGGCAATGTATGGACAAGCTCAGCTCAATCAAAGAATGCTCCCCATCTCTTCTCACACACAGCCACCACACATGGCTTTTAGGGAACAGATGAACATGTCGGGTACCAGTCAAGGGCACAGGAGGGCCAACGCTTTTCTCTCTCAGGATCTACGTCGGCACATGCTGTGGACTACACATGGACAAAGTTCACAAGCTCGCTCAGCTGATGATCTAGAGTCAGACTCTGGTCTGTCTCTAGGTTCTAGTCCACCTCTGGCCTCCCCAGATAATCCTGTTGGTGGTGCACCGGGTTGCCAGAGTGTAGACATTGGCATGACATATAGTGATGGTGAACCAGACAGCATGACTGAGCATGCCAGAAGAGCACACATCCATTACTCAATGGACTACCAGAATCAATCTTCCTTGTATTTACACTCAGGTACACAGTCTTCTTTTTCACCCCAACCCACTTTATCTCAGTCACAACCTAATGCTCTGACTCCTCGGGCAGTAAAACAGCAGGGTCTGGCCTCTGCTCTGAGCGACCTGTTCAATGACTCTGGAGCGTCCAGCAGAGGGAGCTCACAACATAACATGTATATAAAGCCACAAGGAAGTAACTCCACTCCAGGTCCACTGAGCCGAGATGAGAGGCGGGCCATGTCGTTGAAAATTCCCTTCCCCACAGAGAAGATTATCAATCTACCTGTGGATGACTTCAACGAACTCCTGACGCAGTATACTCTGACAGATAATCAACTAGCACTGGTGAGGGACATTAGACGAAGAGGGAAGAACAAAGTTGCGGCTCAGAACTGCAGGAAGAGGAAGCTTGAGAGCATAATTCACCTTGAAAGAGAACTGAACGAGCTGCAGGCCCAAAGAGAGCACCTGGCACAGGAAAGGCTTGAGTTCCAGCGCAGCTTGGGTTTTATTAAGTGTCGCCTTACAGGCCTCTATTCAGAAGTATTTTCTCACTTAAGGGATGAAAACGGACAGCCATACTCAATAGATGAATACGCCCTACAACAGACACCCGATGGTAAAATTTATTTAGTACCTCACACAACTATGCAAAAGAGAGAGCAATGCTAAACAAGTGGGGATAGTCTTATTATTTAATACCCTTACAGAAGGTATACTGTCTGTGCCGAATGAAAGCATATCAACTGGAAGTTACATTTTCATGTAGTTATGACTTTAACATGCATCAATAAACACAAATGCTCTTACAATTGACTGGAACCACACCTGAGTACCtttaaaaaatactttattaaaaaaacat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639130.1 lncRNA upstream 84635 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 214619 20446243 ~ 20532569 (+) True LOC120559772
TU68592 lncRNA upstream 576069 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA upstream 581973 20161419 ~ 20165215 (+) True G51317
TU68552 lncRNA upstream 682845 20063992 ~ 20064343 (+) False LOC120558901
TU68681 lncRNA downstream 904 20751595 ~ 20752345 (+) True G51386
XR_005639095.1 lncRNA downstream 21762 20772453 ~ 20779399 (+) True LOC120558354
TU68980 lncRNA downstream 469960 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 479579 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 527085 21277776 ~ 21288705 (+) True LOC120559383
XM_039800313.1 mRNA upstream 26731 20713382 ~ 20720457 (+) True znf740b
XM_039800314.1 mRNA upstream 26731 20713386 ~ 20720457 (+) False znf740b
XM_039800312.1 mRNA upstream 28968 20713497 ~ 20718220 (+) False znf740b
XM_039801237.1 mRNA upstream 34924 20706757 ~ 20712264 (+) True csad
XM_039800291.1 mRNA downstream 4362 20755053 ~ 20759445 (+) True cbx5
XM_039799358.1 mRNA downstream 198611 20949302 ~ 20960825 (+) True calcoco1a
XM_039799488.1 mRNA downstream 256860 21007551 ~ 21019292 (+) True nr1d4a
XM_039799489.1 mRNA downstream 269814 21020505 ~ 21023161 (+) True mfsd5
XM_039800108.1 mRNA downstream 274449 21025140 ~ 21031195 (+) True LOC120558837
TU68644 other upstream 214726 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 421947 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 425606 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 746750 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 538897 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 610599 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 610599 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 808199 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 1032575 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile