RNA id: XM_039800330.1


Basic Information

Item Value
RNA id XM_039800330.1
length 7710
RNA type mRNA
GC content 0.42
exon number 9
gene id si:rp71-79p20.2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17787344 ~ 17831215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTTATTCTCCTGACCCGGGCGGCTTTTTGGATATCCTTGGTAGTGGTGGTGGCAAACTTTACATGTAGACTAGAATAGAAGTTAAGACACAGACAGTTATCTATCGACTCGCGACAATCCTGATAAATGTATCTTACTCCAGCAATTTGCACTAAAATCCATAGAAAGCTGGTTTTCTTTCTTTAGTCTCCACTCGCCCAGTCTGAATATGGATTCTAGATATATTTTGGAGCAGCCGTCGGTAAGCGTCGGTGGTGTGGATTTTAACTGCCGCTCCGTTCTCCGCGACAACCGGGTCCCCACGGTGGAGAAAAACGGTCCCATGCCGGTGTACACAAACGGACCCGTCTTTTACAAATTTGTAATGGACGGCGGCTCAGTATCGGAGGTTAAAGGACAGCGAACCTCTCAAAAAGGGGACGGACTTTCTCCGGGTGATCGAATATTGTACGACGTTGAAAAAACTGGCCTGGGGGACCAAAAAGACACTAGTTCCTCTGGGATCTTGAAGAGGGCCAGCCCTACTCACTGCCCAGGCGTAAATGGGCAGTTCCCAGGCGGCTTCATGCACTTGGACATCAGGAATCCAGGAAAACATGCCGAGCTGGCCAACAACTTCAGGGCAGCACAAGGGCGGATCGTACCACTGACAGAGAGACAACCCTTCCCTTCTTCCCACATCCCCGTCCCCAGAAACAGGAAGCCCTCAGGTCATGCTGATAAGGAGGTGATGGCTGCCACCGTTCTGACCTCACTATCCACGTCCCCTTTGGTGCTCAACCCTTCCTCTGCAGCCACAGTCCCAGAGCCAGCCAGCAGGGCTTGGAAAGAGATGCTGTCAGCTAGCTACAGCAGTTCGACCAGTGGCAACTGGAGCTTGGACACCAGCGACCAATCAGTGCCCTCCACACCGTCCCCGCCTCTTTCCAGTGATACCAACAAGAACTTCCTGCTCTCTTCCCAGGGTTATGATGTCAGTGAGGATGTCACAGAGAGCACGCACTTCATGTTTGAGGACCCCATACCTCGGAAGCGAAAGAACTCCATGAAGGTGATGTTCAAGTGCTTATGGAAGAACTGTGAAAAGGTCCTCAGCACCTCCTCAGGGATCCAGCGACACGTCCGTACCGTCCACCTGGGGCGAAACAGCGACTCGGACTACAGCGATGGAGAGGAGGACTTTTACTACTCGGAGATCGAGGTCAACATGGACAGCCTAACGGAGGGCTTGTCCAGTCTCACACCCACCTCCCCCACCACGTCTGGCCCTCCGCCCATCTTCCCTCCACCACTCACCGCTGTCCCTCACTCTGAACACATCAATATGAACGATTCGCAGAGCCAAGCCCCGACACTGCTCAGTCAGTCAGCTCCCTCCACGCTTTGCCACATCCGCACTGACCACGCCTACCAGGCCACTGCTCCAGTGAGTATCCCAGTGGGTCCTGAGCTGGCTGGGTTAGGCAATGGTAATGGCACCGGGCCTGGAATTGGGACAGGGAACGGCATCAGTGTGTCATGGCAATCCCCTCCTGTCATTTTCAAAGGCGTCCCGGGCCCTGTTGCTCATGTCCGGACAGTTAGCATCGGTGAAAAGCGGCAGCCCACagccaccacacacaccactgttAACAAGAACCATGCTTTAATAACACCGGCACCTAAATCAACACCAGGAACCAGGAAACCCCGTGGGGAGGCGAAGAAGTGCCGGAAGGTGTACGGCATGGAGAAGAGAGACATGTGGTGCACAGCCTGCCGCTGGAAAAAAGCCTGTCAGAGATTCACCGACTAATCCAGTCCCCTTCCCGTGTCCGTGAGATGAGCTCTTTCTCACTCGGAGCGATGGCTGTAGGTGGACTCTTCCACTGAGGAGACGAGGGGAGATTTCTTCACGATGGAGCTCTCAGTGCTGCTTCCTCCAGCATTACAGGGGGTTCGCCTTCTCTCTTTTCCGTTTCCAAACACAAAGAGAAAATACAATTGGTGGGtaaaaacaaacgacaaaaaatcagcaagaaaaaaagaactttACGCAGGTTCGGTGACTTTTTCTGAGACTGAAACTCATGAATAAGGAAAACATTTCAATTGGAACCTTCtgatttgatttttgtttttctcttgccATTTTTCACAGCCTCAACTGAAGGCAATGTTTAAAGACTACAGATACGCTTTTTGGTATACTCTGTCGTTTATTATAGGAGCATCAAGTAGTCTACTGTTTATGGGGTGGATCATGACTTTTTGGAGGTTCAAGGGTTAACACCAGATTTGCTCAGTAAGACCTTTGTAGCATATCCATTTTTCACTGTCACTGTTAAAGTGACTTTAAACTTACCAAAGGCCAAAAGCCTGTTCACTTACAACCAACAATTTAGGTGTAAGCTAAATCCTGAATCTAGCATCACTGTCTTCTTCAGCCTTATTTGATATCAACTTTATGTTGAAGTACATATTGTTCAATATCTACTACCTGTTCATTAAGCAACTTCTGTACAGCCAGCTGTACTTCTTGTAATTTTGCAAAGATGCACAAAACCTTCACACACAAGTGGTACAGAAGGTTTACCCTTGACTTTCCAAAATATTTTTGAGAGATGTacacaaaatatgaaatatCTCTTCTTCTCTATGCTTGTACCCAAGTGATATGCACCTTGAAGATTTAAGTCCTGAGTATCAGAGTATCAATGAAACCACAGTGTATGCCTGAAAGAGTAGATATCTATTTCCTATATAGAGTTTATTTTCAGCAATGACTTGCTGAAGCAATTAGCAGTTGCACTGTGCAATCAGCAGGATTACAGCGTTTAATATTGTCTTGCTTTGTGGTTGTCATTGTCACCATAATTAAGGTGAGTTGATGCAGAAAggcaattttcttttcctttgacAGCTGATGTTCTTAATGAGATTGTTTACCACAATGAATGATACAGTGTATGAATGATAGTTGCCCTTTGAAACTTTAACTTAAAGTCTGACTGATGTAACTTGTGTATGTAGGGAAATAACATAGAGATTGTAACCCAGCAGTCACTACCTGATGATAATAAGTCAGACATTTGAATTCATTTCTTAGTTTTAATTGGAGAAGTTACCCAATATTTAGTCTTTGGTATATCTATCACTAACCAACATTGCAACAATTGTAGACATTTCATAGGAACCCTTTAGTTGTTTAACCCTAGAACCCCTAGAATGgtctgaaaataataaaaagtaagAATCAAGTCAGTGCTGAGCAGCAGTGTAGGTAGTCAACTGTATACTGATTGATACAGAAGTGGAGCAACAGTTTAAACATGTTTCACCAAAGTGAAAGTAAAGATTGTTTAGTTTAGAATGGTCCTGTAATACAAAGTGTCACGCCTGCTTTCCCAAGCCTAGATGTAATATAGGTGGTAGACTTTTAGACCGTTGTAATTTTTGGATATATCCCCTTCACctgtattaaaaaaatagcaaatAGCACCCTTTCAttttaaagcctttttttttttttttttaaaccagtttGGCAATTCTATATTATTATCTAAGATACACAATGATGAAAGAAAAAATGGCAGTGGTAACCTTACATTAGCATTTAAAGGAGCAGTTTGTAGGATTTAGGGGGATCTATTGGCAGAAATGGAATATAATATTCATAATTATGTTTTCATCAGTGTATAGTCACCTGAAAATAAGAATTGTGTTTCCGTTTCAGCTTAGAATGAGCCCTTCATATCTACATAAGGAGTGAGTCCTCTTCCCTGGAGTCTGCCATGTTGCACcgccatgtttctacagtagtCCAGAATGGACAAACGTTTTTACGTTACCAGAAGGCCACCAAAGGTTCTATTACAGATGAGGGAAGGGGTATTCAGTTGGTTACAATCTGCAACCTCACTGCTAGATCCTACTAACTCCTACACACTGCTCCTTTTAATATTTTAGAGAAActtggattttttatttttttttataatttgaaAAGACACTCCTGTAACACAGGAGTGTTCATACTAAAGACAAATACAAGTCAGCTAGTTATTCTTTGAAGGTTACCAGCCTAAAACTGTACCCCTACAGGGTGAAGTGTATTTTCAGTAATGCTCTCTTATTGGTGATAAAAATGATAAAGGAAAATACATAACTACACATCAGTAGTTATAGTTAATAACATTTTTAAGTAATTCCTAAATTCAGAGATCCCCAGAAGATTATTCGTATCATTAGTAACATATAGTCATTAACTTTCTCTAAGTCGACTTAGTAAATGATAATGATAAAAGACAATAATGATCTTTTCAAGATGATAACTTCTCACGCTTCCCATGGACTAtagtcaagtcaatttatttatttagctcaaaatctcaaatttgcctcACAGGGCTTATCAACCTGTGACACCCTCTATCCTAAGAAAGAAAAACTCTAACGGGTAATTTTCTGTTCTGCTCTTGTGACAGTAGATGTTTAGTTTGGAAGAGATTTGCTCTTGTGCTGTTAGCAGCTTTTTGAATGTAGATTCTGCTGTGTGTTGTCTACTCTCTAAGCGCTCCTGACACTGACCTGACCACCATAGCTACCTatgacacatgcacaaacacagtgCCTGTCCTCTCCTATATGAGCATATATCCTTGACTGAGGTACAGTATGACTTCAGACCTCTGTCGCCATAGAAACACCTTGTGCTTTCACCTGTCGCCACCGGGTCACTGGTGCCGTCTGCTATTGGCTGACACCACGTTATCGCTTCTCAATGAAAGCAGATGCTTGACTGTTAATTGGTGGCTTGAAGTCAAGCTAAGTTAAGCACACTTGTTAGCCGTAATAGTGGTAAAACAATATCACAGTCATTTCCTATTCTTAAACCacctttttgttttgaaaatgaatgatCCTGCCTGTAAACCGTTTATTTCACTGGCATCCCAGATAAGTTTCCGGTCTCTTCCGGTCAGAAATTTCACAAAGTGCCAATGAAAAGaacataaaaaggaaaaaggtaTACTGACCTAATGAAATTGCACTACGTTGCACTGCGCAAATGCGTGATGTTTTTATACATGGACattttatatacacacattttgaaGTAAAAGGATTTTCTTATTTTCCGAGAGGGTGGGAGTGATATCATCACTGCCCAATAGAATAAATGGGGTGTCAGGGATAGGGGGTTCTGTACCTCTAGGGTCCCCCATTAATAGCCTGTCTTGCTCTCTTGTCAGATTGATTGTACTAAACATACTGTCTGTTTTTAGAAGTGTGGTACTGGGAAGTACAGTGTGGTACTTAGGTAGTCAGTCACTTTGCCTTTTCTTTGGAGGAGTACCAAGGGCCGAAAGCAGCACCTGCCTTGTCTCAGTGATGGGATAACACCAGTCTCAGTCTGTGGCTTCACATTAATGTCTTGATAACCGATGCTTTTACAGTGCTTTATTGCCTGGAGTTATCCATAAAGCCCATCTTTGTGCTTCctttcttctttacattttacAGAGCTGAGGTAGTAACTATGTAGATACTGTTATTAGTGCTGGATACCACTTTTAATTCTGTTATCTCTGGTTTGATCGTTCATTGAGTGTCAAATGCACCCCATCAGGTCTCTCTCCATCCTAAGCACTTTTAGATTCCACCAGCAGGGTTACAGGCTGATGCTTTTGCTGGTACTAAATGGGACTGTTGGCATGTTTTAAGCCAACAGGTTCCTGTGGTTGCCGCTATTCCaccttatttttaatttttttttctcgagTTGCACTAAACTGGCCTGTGAAGATCAAGGCTCAAGTCGTATCCGTAAGCGCTCGGCTTGTGTCATTATGGCCAGAAAAGAACTGTGGGTACAAAGTTGCTGTTGTGGACTTTTTGCAAAAATGCATTACAACTTTCACCTATAAAATGGGAGATGGAGATTGACGGTGACTGTTAACGGGTGTACAGGGGAAGAGAGCAGACACGCGGTGGCGATATAAAGATGGATTTGCCATTTCAGGGCTTTCTTGTACATAATGCAACATAAAAAGAACCATGAGGCTTTTTCATATATTGTTttcgttgttgtttttcttgttatatgaaaagtaaactttttttcttttttttttacagtatagtTGCTCAGACTATTTTCTTTCAGACATTTTTTCGTCGATTGAGAAGCTATAGTGAACATAACACGTAAAAGATTCTATGTATATTGTAGCTTGGAGGcaaaggggagaaaaaaaaacctgttgaaTGTAAAACCTATAAAAACAAGTCTTTTTGTTGTTATAATTGCTGGCTAGTTCGTACTGCCTGTAGTGAACCTGTAGTGCGTCTTGATTTTGGTATCTACGTTTTAACACCCACCGCTGTCGCCACACTGCTATGTCATGACATAATGCAACTATGCAGTATTGCTTTACTATCTTACTTTGTGCAATGAGATGCTTTTATAATGGAACAAGAACTAACTTGAGCTTTTTGGTGACATCCGGGCTACTTACTCACATGCTTTCTGTTCCTATTTTGTCTTTCTCCCTGCCAAATAGAAATGTTTCTGAATATGTGTGGTTATCATGGTGGTGGATGTTGTTTGTGGTTGTGACGTGAAGTTGATGTTAGGCAGGATAACCTTCAAATTTTAACCTTGTGGGAATCTTTATCCTGCCCTGCACATTCCAACCGACAGCACGCTTTTAGTGTCTTCCACTTGTTTCCTACTAGACATATCCTTCCCATTTCCTTTTCACTACAGTGATTCTTCTCTGATCACCTTGTCCTTTTACCATTTCCTGTTCTTGTCCTATCCAGCTTTACTGTGGTCCCACCCAAGCCTTTACCCAGTATATTAAGCTAAACTAAACCCTTGAAATGTGCATCAAATAAAGCCTTCATTTTATATTTCCTATGTTTGTCAAAATGTATGTGCCGTTTTCTTGAATGTCAGTTTTCGTTTGTGCGTAAACCAGCAGCAGCAAAGCCAATAGATCTCCTTCCAAatcaaatgtaatgtaatacattgcaatgGCAGCTCCTCTCAATTCTCTGCTTCTTCTACTGTGGCGTTATTGTTTGTCTGGGCTTTTACCCCTCTATTTGTCAGATCTCTCATTCGATTACCTTTTTTCTCCAGTTATGTTTTTACTGAGCCTTACACAGGCTGGTGTGAAAACTGActtttgcttgtttttgttttctcattgattgattgattgattgattgattttctgGTTGAGTTTGAGGTTGTATTGCATGTCTAGCATTGCtcattttttgttctttttttttttgttaggagATACAACACTGAAGGGTTTTATGTGTCAGATTTCCCCTTTCAGTAACTGATAGCCCAAGGCTGATGTAGTCCATTTTCctctaaatgtaaaaaatgctCATTGCAGcctgacaaacacaaacacaaagctaAAAGAGCTTTTGAGGGAAATGTAACGCCAGCCTCGGGTCTTCACTGGAGGGCAAGATTTCTCCTGTGTGTGGGCTCGGCCTCTGGTCTTCATCAGCAGTCCCACGCACACGGAGGAAGCACTTTCTGAGGAGTGGTGCACTCAAAGAGTATTTGTGTGAATGTCAAGCCTATGACTAGTGCTTGAAAAGATGGATGACCATGTATGATGCTGATAATGTGATCTATGTGATGTATTGtgacagaaagaaaataaaccTGAATGGAAGAAGTCTGCCGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67813 lncRNA upstream 11108 17750285 ~ 17776236 (+) True G50725
TU67785 lncRNA upstream 116713 17668838 ~ 17670631 (+) True G50700
TU67540 lncRNA upstream 623679 17163179 ~ 17163665 (+) True G50518
TU67530 lncRNA upstream 635431 17151182 ~ 17151913 (+) True G50509
TU67525 lncRNA upstream 651854 17134688 ~ 17135490 (+) True G50505
TU67848 lncRNA downstream 112497 17943712 ~ 17944815 (+) True G50752
TU67849 lncRNA downstream 125983 17957198 ~ 17957644 (+) True G50753
TU67947 lncRNA downstream 302227 18133442 ~ 18133815 (+) True G50817
TU67981 lncRNA downstream 406303 18237518 ~ 18237810 (+) True G50846
TU67995 lncRNA downstream 436250 18267465 ~ 18267887 (+) True G50860
XM_039801198.1 mRNA upstream 946 17741371 ~ 17786398 (+) False LOC120559485
XM_039801196.1 mRNA upstream 946 17741372 ~ 17786398 (+) True LOC120559485
XM_039801195.1 mRNA upstream 946 17741372 ~ 17786398 (+) False LOC120559485
XM_039801197.1 mRNA upstream 946 17741372 ~ 17786398 (+) False LOC120559485
XM_039799338.1 mRNA upstream 97477 17686147 ~ 17689867 (+) False birc7
XM_039800429.1 mRNA downstream 208712 18039927 ~ 18057366 (+) True prpf6
XM_039801826.1 mRNA downstream 229974 18061189 ~ 18064974 (+) True aar2
XM_039801981.1 mRNA downstream 309609 18140824 ~ 18156119 (+) True LOC120559899
XM_039801165.1 mRNA downstream 360672 18191887 ~ 18212077 (+) True slc9a8
XM_039799290.1 mRNA downstream 424677 18255892 ~ 18300333 (+) True opn7b
TU67812 other upstream 14760 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 590171 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 792643 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 1381739 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 1393112 16380044 ~ 16394232 (+) False brpf1
TU68128 other downstream 850928 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 898265 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 1625276 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 1936437 19767652 ~ 19768564 (+) False LOC120558920
TU68517 other downstream 2165296 19996511 ~ 20000438 (+) True zgc:194242

Expression Profile