RNA id: XM_039800372.1


Basic Information

Item Value
RNA id XM_039800372.1
length 1715
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC120558968
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7765600 ~ 7773185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTAGAAACTAGTGTCATGGCATCTCACGCAGCACTCTTTGAAGCGCAGCAGTGAGAGTTTAATCCGTCTCTTTATCCTTATTTCAACACATTAAGGACGCAACGTCAGAGAACATGCGTGAGTGTATCTCAGTGCACGTCGGTCAGGCTGGTGTCCAGATTggcaatgcatgctgggagctTTACTGCCTGGAACACGGGATCCAGCCGGACGGACAGATGCCCAGTGGCAATACTTGCGGAGATGATTCCTTCACCACCTTCTTCAGTGAGACTGGAGCTGGAAAACACGTCCCCAGAGCTGTATTTGTCGACCTGGAGCCTACTGTCATCGATGAGGTGCGTACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGTAAGGAGGACGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGACGTAATGGACCTGGTGTTGGACCGGATCCGTAAACTGGCTGACCAGTGCACCGGCCTTCAGGGCTTCCTGGTTTTCCGCAGCTTCGGGGGTGGCACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTTTCTGTCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTTCTTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTGAACAGGTTGATCAGTCAGATTGTGTCCTCCGTCACTGCCTCCCTTCGTTTCGACGGTGCCCTCAATGTTGATCTGGCAGAGTTCCAGACCAACTTGGTGCCATATCCCCGAATTCACTTCCCCCTGGCCACCTATGCCCCTGTAGTCTCTGCTGAAAAGGCTTTCCATGAGCAAATAACGGTGGCACAAATCACCAACGCCTGCTTTGAACCAGCCAACCAGTTTGTGAAATGTGACCCTCGCCACGGCAAATACATGGCCTGCTGCCTTTTGTATCGTGGCGATGTGGTGCCCAAAGATGTAAATGCTGCCATTTCCACCATTAAAGCCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATCAACTACCAGCCGCCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAGTTTGATCTGATGTACGCTAAGCGCGCCTTTGTTCACTGGTATGTGGGTGaggggatggaggagggagagtTCTCTGAGGCCAGAGAGGACATGGCCGCTCTGGAGAAGGATTATGAGGAGGTGGGAGTCGACTCTAttgagggggagggagaggatgAAGGAGAGGAATATTAAAAGGTGCTAGTCAAACAGGAAACGATTGATTCCATTCCGTCTTAAATATGTTCCAAAACTGTTTATTAATTATCAGTTTGGTTGTTCAGAATAAAACTCCTGTAGGACCAGAGGGGACATCAGCATGTTTATGGTTGGAGTTAACGCATTGGAAGGTGAGGAAGAGGATTATTAAAAGGGACAAAGCACTAGCTAGTTAAACAGGAAACAATTGCTACAAATTAAAGGCATTCCACTGTTAGTCTTTCAAA

Function

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63808 lncRNA upstream 62864 7607890 ~ 7702736 (+) True G47786
TU63822 lncRNA upstream 145511 7617240 ~ 7620089 (+) True G47798
TU63817 lncRNA upstream 162046 7603099 ~ 7603554 (+) True G47794
TU63811 lncRNA upstream 179643 7584663 ~ 7585957 (+) True G47789
TU63784 lncRNA upstream 296529 7468421 ~ 7469071 (+) True G47768
TU63928 lncRNA downstream 69309 7842494 ~ 7902442 (+) True G47881
TU63971 lncRNA downstream 343195 8116380 ~ 8117222 (+) True G47909
TU64109 lncRNA downstream 559337 8332522 ~ 8333531 (+) True G48002
TU64129 lncRNA downstream 607902 8381087 ~ 8381428 (+) True G48017
TU64130 lncRNA downstream 608306 8381491 ~ 8381729 (+) True G48018
XM_039800369.1 mRNA upstream 649 7730815 ~ 7764951 (+) True lima1a
XM_039800370.1 mRNA upstream 649 7732807 ~ 7764951 (+) False lima1a
XM_039799776.1 mRNA upstream 94586 7652073 ~ 7671014 (+) True LOC120558668
XM_039799774.1 mRNA upstream 94586 7654101 ~ 7671014 (+) False LOC120558668
XM_039799775.1 mRNA upstream 94586 7654101 ~ 7671014 (+) False LOC120558668
XM_039800378.1 mRNA downstream 68961 7842146 ~ 7848433 (+) True igfbp6b
XM_039800379.1 mRNA downstream 68961 7842146 ~ 7848433 (+) False igfbp6b
XM_039800380.1 mRNA downstream 72487 7845672 ~ 7848434 (+) False igfbp6b
XM_039800381.1 mRNA downstream 82581 7855766 ~ 7876360 (+) True pip4k2ca
XM_039800382.1 mRNA downstream 109982 7883167 ~ 7886762 (+) True gpr182
TU63466 other upstream 1059713 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 1565006 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 4253116 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 4482430 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4995147 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 339256 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 569566 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 569733 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 569733 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 595458 8368643 ~ 8380578 (+) False pkig

Expression Profile