RNA id: XR_005639214.1


Basic Information

Item Value
RNA id XR_005639214.1
length 4045
RNA type transcript
GC content 0.55
exon number 15
gene id brpf1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16380044 ~ 16396208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCGTCTATGGCGTAACGTTACAGCAACGGTTGCCCCTTTTGTTCAACCGAGTTCCTGAATTATTCCCAACACAATGACATGATCGGGatattatattgttttataaACACATTTCACTGTACCTACGCGTCCTGTAATTCTCATCTGGGATTATTTTATGCATTAAAACCGATCTGCAACCCGTCCGATCTGGTGTGAGGTTTCCGAAGCACGCAGTCTTGGGGAACGTGGAGTAATGTAAACTTGAACAGCATCTGTCGCAGCAGTGGCTGTTGGCAAAATGGGACTGGACTTTGATGTAAAGACGTTCTGTCACAATCTGCGGGCCACCAAGCCCCCTTACGAGTGCCCTGTGGAGACTTGTCGTAAAGTCTACAAGAGCTACAGTGGCATTGAGTATCACCTTTACCACTATGACCATGATAACCCAACTCCTGCACAGACTGTGCcccaaaagaagagaaaaggacGGCCTCCTCGCGCCTCATTGGCCGGGTCAGGTGATACGGACGATGGTGGAGGTAAGGGAGGTGGAGGACCGGGGCACGGGGGGAACACACCGGGTAGCCCCAACCGGTCAGATCACTCTCACTCCCCGGGCAGAGAGACAATGACCTATGCCCAGGCACAGCGCATGGTGGAGCTGGAATTTCAAGGACGCATCCAACGCATTAGCATCTTTGAGAACATTGATGTGGTGTCAGAGGAAGACAGTGATGCAGAGGATGCACTTCCATCTGGTACTGGTGGTAGTGGCGGAGGGGTGTGTAACGGTAGTGATGGCGGAGCTGGAGGCAGCGAGGTAGGAGGTAGTGGCAAGGACCGGCCAGATATCCCATCCTCTAATGGGGGCAAATCCACTCCAAAGTCTGGGAAGCATAAGAgtaaggaaaagaagaaggatGGCTCATCTCATCATCACAGCGCTCTGTCCGGCCCTGCAGTCAAACTCCCTGAGGCGGTGTTCAGAGAACTGGACCAAGAGAGACCTGATGCCCCTCCTCGACCATCATCTTACTACAGGTACATTGATAAGTCTGTGGAGGAGCTGGATGAGGAGGTCGAGTATGACATTGACGAGGAAGACTACATCTGGCTTGACATCATGAACGACAAGCGGCGGCGTGACGGTGTTACACCCATCCCTCAGGAAGTCTTTGAGTACCTCATGGATCGCCTGGAGAAGGAGTCGTACTTTGAGAGCCACAACAAGGCTGACCCCAGTACCCTAATCGATGAAGATGCTGTCTGCTGCATCTGTAACGATGGCGAGTGTCAGAACAGCAATGTGATCCTGTTCTGCGACATGTGTAACCTGGCAGTGCACCAAGAATGCTATGGTGTTCCATACATCCCAGAGGGCCAGTGGTTATGTCGTCGCTGCCTGCAGTCGCCAAGTAGAGCTGTGGACTGTGCTCTCTGTCCCAACAAGGGAGGTGCTTTCAAACAGACAGATGATGCACGCTGGGCACACGTTGTGTGTGCCCTCTGGATCCCGGAGGTCTGCTTTGCTAACACAGTCTTTCTGGAGCCAATCGACAGTATTGAGCACATTCCTCCTGCACGCTGGAAGCTCACCTGCTACATCTGCAAGCAGCGTGGTTCAGGTGCCTGCATCCAGTGTCACAAAGCCAACTGTTACACGGCTTTCCACGTCACCTGTGCCCAGCAGGCGGGCCTCTACATGAAAATGGAGCCCGTCAGGGAGACTGGGGCCAACGGCACCTCTTTCAGCGTCCGCAAGACAGCTTACTGTGACATCCACACGCCTCCGGGATCAGCACGGCCTTTGGGAGGAGTGGGCGGCGCCAGCATGGGTTCGTCTCACAGTGAAGGAGAGCTGGAGGAGGATGACGAGCCCAGCATTGGCCATGATGACGACTCCAAGGGCTGGAGCTCTGAGCGAGCCAAGAGGGCGAAGGCCAAGTCCAGGCTAAAGATGAAAAGAGCGAGGAAGATCTTGGCTGAAAGGAGAGCTGCTGCGCCAGTGGTGTCTGTGCCCTGCATACCTCCCCATAGGCTGAGCAAAATCACCAGTAACTTGACGGTACCCAGGAAGAGCCAGTTCATGCAGCGACTTCACAGCTACTGGACCCTGAAGAGGCAAAGTCGTAACGGCGTACCTCTGCTACGCCGGCTCCAAACCCATCTGCAGTCCCAACGACACATCGACCCACTCCCACCACAACCTCCATCGCAGCTCCCTCCGGTGACTTGTGTTATTAGGGACAGCGAGGAGAAACATTCTGCTTTAAAGGAGCAGCTGAAGGCATGGCAGAGACTTAGACACGACCTGGAGAGAGCCAGGCTACTGGTGGAGCTCATCCGCAAGAGGGAAAAACTCAAAAGGGAGACGATTAAGGTGCAGCAGATGGCGCTGGAGATGCAGCTGACTCCCTTCCTGGTGCTGTTGAGGAGTACTTTGGAGCAGTTACAGGAAAGAGACATTAACAACTTTTTTACTGAGCCTGTACCGCTGGcagagGTGCCAGACTACCTGGACCACATTGACACTCCAATGGACTTCCAGACCATGTGGAACCTGCTGGAGTCCCATCACTACCTCACTTTTGAGGCATTTGAGGCAGACTTTGGCCTCATTGTCAACAACTGCCTAAAGTACAACGCCAAGGACACAGTCTTCTACCGCGCTGCCCTGCGGCTCAGGGAGATGGGCGGGGCTGTCATAAGAACCGCCAGGCGCCACGCTGAACGGATAGGCTTTGACTATGAGGCTGGCATACACCTCCCCCGAGAGCCGAGCCCAGACAGTCAGTGTGAccaagacagagacagagacagagagagggaacgGGAACGGGAACGGGAACGGGAACGAGAACGGGAACGGGAACGGGAACGAGAACGAGAACGGGAACGGGAGCGAGagcgagacagagacagagacagagacagagaacgaGACCGGCCATTGTCCTCTAATGAAGAAGACCTGCTCCTGCCAGAGAACAGGCGGCGGCTGCCACTGGAAGAGCAGCTGCATTACTTACAGGCGCGTCTTGATGAGGTCAGCTCGGGAAAGCACAGCATTGGTCAGTCTCGTAGAGCCAAAGCTCTGAGAAAGGAGATCAGTGTAATCAAGAGGAAGCTTGCGCACCAGCGGGAGGGAGGCTCCGTTATGGGGGGCCGGGAATCTGTGGGAGGAGGAGACCGGGGTATTTCCCTCCCCCATCACCCATCCTCTTCGGGACACCATGATGAAGGGGGGGAAAGCAGCAGCCAGGAGATTGGTGGAAAAGATCTGAGCGTGTCCTCGTCTGCCCTGGCTCCAGAGGTGGGCCGTCGAACATCTGTCCTCTTCTCCAAGAAGAACCAAAAAATGGCCGGACCCCCCAAAAGGCCAGGACGCCCTCCCAAGAACCGGGATGCTGGCTACGCTGGGACGGGGTTGAGCCAAAGCCCTATCGGTCCCCCTCAGTTGCCTCTGCTGTCACAAAGCAGGCAGAGGAAGAGGCCCCGCAGCCCCCGCAGCAGCTCCAGCTCTGACAGCGACAGTGACAATGACGACCTGCTCCCAGgTTTGCCAACTAACGGTTTCGATGGAGGAAACCAGCCAGTAACGGAGAGCTTCCGCGTGTACAGAAGTGAGTCCCGTCTCCCTCGTTCCAGCTCAGACTCGGAGTCCacaaccagcagcagcagcagcgcagcTTCTGACCGGACCAGtgacttcctggagtcttgtcatcACTTTGATGTTGCCAGGCAGCCAgcggagactccaggaagtcactgcacCCGGCCCCTGGTCACCAGGAAACAGTTCCAGCATtacgACCCCCTCTAAGCAGGGCAGAGGAAAGGCGTCGTTCTCTCGCTCTGCTTTCCAGGAGGACAGCAGTGAGGAGACATCGGGCACTGAAAATGATTCCTACTCAGTTGGAGGATCGCGGAGTGTTTCACATTTGGTGCGTGGTCGGGCCAGGTCCGGATGCTGGATGACCTCTGATGACTATTCTTCTCTGGAAGCTCTGGACCTGGTGTGGGCGAAGTGCAGAGGCTATCCTTCATATCCTGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67104 lncRNA upstream 400 16365020 ~ 16379644 (+) False LOC120559119
TU67095 lncRNA upstream 960 16375308 ~ 16379084 (+) False LOC120559119
TU67076 lncRNA upstream 69027 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA upstream 69027 16305349 ~ 16311017 (+) False LOC120559121
TU67086 lncRNA upstream 69027 16305349 ~ 16311017 (+) True LOC120559121
TU67180 lncRNA downstream 31386 16425618 ~ 16425820 (+) True G50280
XR_005639171.1 lncRNA downstream 150037 16544269 ~ 16545835 (+) True LOC120558722
TU67226 lncRNA downstream 172769 16567001 ~ 16569382 (+) True G50318
TU67228 lncRNA downstream 185827 16580059 ~ 16580993 (+) True G50320
TU67237 lncRNA downstream 211733 16605965 ~ 16626218 (+) True G50326
XM_039800576.1 mRNA upstream 399 16322821 ~ 16379645 (+) True LOC120559119
XM_039800584.1 mRNA upstream 399 16322821 ~ 16379645 (+) False LOC120559119
XM_039800578.1 mRNA upstream 399 16322821 ~ 16379645 (+) False LOC120559119
XM_039800585.1 mRNA upstream 399 16322821 ~ 16379645 (+) False LOC120559119
XM_039800581.1 mRNA upstream 399 16322821 ~ 16379645 (+) False LOC120559119
XM_039802021.1 mRNA downstream 3437 16397669 ~ 16408461 (+) True LOC120559923
XM_039799877.1 mRNA downstream 15049 16409281 ~ 16418412 (+) True wu:fl23c11
XM_039799878.1 mRNA downstream 15049 16409281 ~ 16418412 (+) False wu:fl23c11
XM_039799884.1 mRNA downstream 24603 16418835 ~ 16424181 (+) True LOC120558716
XM_039799873.1 mRNA downstream 35347 16429579 ~ 16450630 (+) True ift122
TU67106 other upstream 400 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other upstream 2555 16375308 ~ 16377489 (+) False LOC120559119
TU66854 other upstream 512675 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 581087 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 1367077 15012895 ~ 15012967 (+) True trnak-cuu
TU67161 other downstream 4965 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 583666 16977898 ~ 16994701 (+) True eif2d
TU67547 other downstream 791679 17185911 ~ 17197173 (+) True G50523
TU67812 other downstream 1347228 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 2287911 18682143 ~ 18686302 (+) True G50983

Expression Profile