RNA id: XM_039800616.1


Basic Information

Item Value
RNA id XM_039800616.1
length 2707
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120559133
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12848812 ~ 12859392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAACACAAcagcacacagctgagccgTGCTGAGCCGTGCTCCGTCAACCTCAACACTTCTGGTCTTCTATCGGTTTCTGCGCACACCACCTCTGACAGGCTTTTACCTCCGCTGCCAGCACTGCGAAAAAAAAGATGCAGCTCGTCATGACTCTCCTTCAGATTgttgctgtgcttttcctgccaGGAGCATGGGGTCAGAGCGGCGGCAGCGCACTTGGTGTGGTGGTGGAGGCCAAGAACATCACGCTCCCTGCAGGGTCTAAGGCCGTTCTGCCCTGCCACAGCCCCCGCATGGTGTGGACCCAGGACAGACTGAAGGACCGTCAGAGGGTGGTGCACTGGGACTTGGTGCGCAGCAGCCCAGAGTACTCTGTGGAGCGAGTCCTGGACATGTCCCCCGGAGCCCGTCAGAGGGTCTACAATGGCTTCAACAAGGGACGCATTTCCATCCCAGGCTCTGCTTTCAATGATGGCAACTTCTCTCTCATCATCAACAATGTGGTCTCGACTGACAAAGGAGTTTATACTTGTAATCTGCACCATCACTACTGCCAGATTCACCAGTCCATTCAGATCCAACTCAATGTCACTAAGTCAGTTCGAAAGGAGAAACGTTACTGGGATGGAGAGAAGACTGTGTTTGTTGTCTTGTTGGGCAAGTCAGTGGTATTGCCTTGTGTGAACCGGCGCTCCCTGTGGAGAGAGGGCCTGCAGGAGGACCAGCAGCAGGTGGCTCACTGGGACTTCCAGCCCCCTGGAGTGCGTCCTGATAGGGCTGACCGTCTGGTGGACCTCTATGCTTCCGGAGAGCGCCGGGATTATGGACCACGCTTTGGACAGAGCAAGATGAGCGTGGAGGAGGATGCTTTCACTTTAGGGGACTTCTCACTCTCCATTGCTGGATTGATGCCTGATGATAAAGGCCTGTACTCCTGCCACCTGCATCACCACTACTGTGGTCTGTATGAGAGACGCATCTTCAGGCTCACTGTGGGACCTCCACTTCCATCCGCCCCCACTACAGCACCCAGAATTTTCAAGAATGATTTGCCAGAGCCAAGGACTGAAGTGGTGGAGGGTCCACGCGTGGTGAATGTCATCCTCCCTGAGCAGCGAGGTTATTTCGTGCAGCATTTGGGCTACTTCCTGGCAACATTCTTACTGCTGGCGTTCATCGTTGTCGTTGTCATTGTGCTTACTCGGCGACGCAAGAATAGaggTCTGGAGTATGACCTGCGTCGATCCGATCGTGGGAATGTGATCAGTGGAGGTGAAATGTCATTAGACTGCACAGAGCTGAGGCCCTGTAACCAAGACCCTCTGAATTCAGACTACAAAAACAACCtactgaaagagagagatatgACCAAAGACTGCAATAGGGACTTTGATGGGAAGCTGTGGAAGTGAGAGCGATATTTCTGCTTCTGATGCTGCTGGCAGGTCCAGGGCAAACACCGGAAGGGTAAAGGAGCGTGgagagaagggaaaaaaaggggaaacccaggagaggacaggaggaaTGCTCCCTCTGCTGTAACTCTAACACACTAAGCTTTTTTACTAAAAGCCACCATCATTTTTTTACATGTCACTTTTTATATAACTTGCATTTTCACCAGCTGTTATGGTTAAACATATATATTTGATCCTTACTCTTTGCATTCATTAGTTGGTTTATGTTGAATActaggcatttttttttattatcctttaaaagaaaaagaaattacaaaaatgCATGTTCATTTAAGTATGTTTTATGTGTACTTTGCATGCATACAGAACTGCAAGCTCACAGCTTAAAGCTTTTCCATTCCTGAGatttaataattttctttttttgcacaaATTTGCTatactgtaatttgtaaaggtATTTCATCATGTTTCAAAGGTAAAGTTACTGTAGGTAGACAGTTTCAGACAGTGTTTGGAAAAAAAGTGCCACACATAGCTATATATAATAAGACATTTTAAACAGATTATGTCACTTTCTTTGTTTCCTttcttttgtattattttaattttatttacaaaactCGACTGTGGTGACAGTAGATTTTATGTAATTTAGAAATTCAGACTGTCAGACTTAAATTCTTCTccaaataatattttttccccaaatggATATATTTGTTCATTGATAACTTATCAAGTGAAAAATGGTGACATTGTAGGACCATGGACTAAAGGCTCAGTCTACTGAAactcaggtaaaaaaaaaaaaaatcttaaccaTTTATTTGGTTTTTAATGGGCTGTGCAGGACTTGTTTGCATCAAGCATGTATAAATGATCCTGGTTTGTAAAACACTGAATTTTCCTTATTAATCTGCTGGTCAATGCTACAGGTACAAATCTATTATAAAACATGCGGCTCTATGAGGTTTGCTGCAGGAAGACAAGTGTCTACTATCTCAGTAATTCTAAATCACAAACTGTAATCATTCATTTAACACATTTTCCTCTTTGGGGAGCACAGGTCATTCATGAACCTTCTCCAGCTGGTTGGGTGTTGGCGGTCTTCTCTGCTTCCTTCCAGGATGATTTTGTTTCCTTGAGTACTGCCTCCACAGACCTTTTCCAGAAAACTGTAATCctaacctctttttttttcttttctgctctTGCGCACTTGCTCACACTCTGTTGGTCTCTTCTAAGAAAAGATGACTTCTATTAAAGATTCACAGCAGTG

Function

GO: NA

KEGG:

id description
K24402 MXRA8; matrix remodeling-associated protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65844 lncRNA upstream 4378 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 8247 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 65024 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 116395 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 171134 12674342 ~ 12677678 (+) True G49301
TU65874 lncRNA downstream 61613 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 68864 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 447448 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 506339 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 506339 13365731 ~ 13378409 (+) True G49474
XM_039799295.1 mRNA upstream 837 12845618 ~ 12847975 (+) True aurkaip1
XM_039800812.1 mRNA upstream 5417 12823346 ~ 12843395 (+) False LOC120559236
XM_039800623.1 mRNA downstream 1329 12860721 ~ 12884287 (+) False LOC120559134
XM_039800622.1 mRNA downstream 1329 12860721 ~ 12883086 (+) False LOC120559134
XM_039800617.1 mRNA downstream 1332 12860724 ~ 12886224 (+) True LOC120559134
XM_039800618.1 mRNA downstream 1333 12860725 ~ 12886224 (+) False LOC120559134
XM_039800619.1 mRNA downstream 1333 12860725 ~ 12886224 (+) False LOC120559134
XR_005639089.1 other upstream 190504 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 390373 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 625174 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 638403 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 751975 12092779 ~ 12096837 (+) False LOC120559364
XR_005639216.1 other downstream 1329 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 672998 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1253658 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1253876 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1253876 14113268 ~ 14121022 (+) True hmga1a

Expression Profile