RNA id: XM_039800619.1


Basic Information

Item Value
RNA id XM_039800619.1
length 4001
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC120559134
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12860721 ~ 12886224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTTCCTGTTTTAGTGCCGAGAGAGCCACCGTAGCGACTCACACCGGAGCAGGAATACAGGCACTCACAACGCGATTATGTCTGGATTTTCGCTGGCTTCGTCCAACACACGGAGCTGCGTTCACCATCGTGTTGTGTCCAGGTTTATGTGTTAGGGACTGCTGTTATGTTATTCTACGGGTAGCTGGTCACATAGCAGGCCTGTTTATTGCGCTGCCAACCCTTGTTCCTTTCATGTGTCAATGATTGTCCTCCCCTCACTCTCATGGCGGAGACTAAAATAATATATCACATAGACGAGGAGGAGACTCCTTATCTGGTCAAACTGTCCGTCTCTCCAGAGAAAGTCACCTTAGCGGATTTTAAAAATGTCCTCAACAATCGACCGGTCAATAGCTACAAATTCTTCTTCAAATCGATGGACCAGGATTTTGGGGTTGTCAAAGAAGAGATTTCCGATGACAACGCCAAGCTGCCCTGCTTCAACGGGAGAGTAGTATCCTGGttggtcCTGGCAGAGAGTGCCCACTCTGATGGAGGATCTCAGTGCACAGAGAGCCATCCAGAGCTGCCCCCTCCTCTCGAGAGAACAGGGGGCATTGGAGACTCACGGCCTCCCTCCTTCCATGCCAATGCGGTGAGCAGTCGAGATGGCCTGGACACCGAGACGGGAACAGAGTCTCTCCTGAGCCATcgcagagagcgagagagagagcgggcACGGAGGAGGGCGAGAGAAACTGAGCtcCCTCGCATCAACGGTCACTCAAAATCAGAGCGCACCGCAAGGGACTCAGCCATGGGTTACGACAGCACCTCAGTAATGAGCAGCGAGTTGGAGTCCAGCTCATTTGTTGACAGCGAGGAAGACGAGGATGCTAGCAGGCTCAGTAGCTCCACAGAACAGAGTTCTTCTTCACAGCTGATGCGAAGACACAAGCGCCGCCGACGGAGGCACAAAGTGGCCAAAATAGACCGGTCTTCATCCTTCAGCAGTATCACAGACTCAACTATGAGCCTCAACATCATCACCGTCACGCTCAACATGGAGAAGTACAACTTTCTAGGTATCAGTATTGTTGGTCAGAGTAATGACCGGGGAGACGGCGGCATCTACATCGGCTCCATAATGAAAGGAGGCGCTGTTGCTGCTGATGGAAGAATAGAACCTGGAGACATGCTCCTTCAGGTGAATGACGTAAACTTTGAGAATATGAGCAACGACGACGCTGTGAGGATCCTCAGAGAGATTGTTTCCAAAACTGGTCCTATTAGTCTTACTGTTGCCAAATGTTGGGACCCATCTCCACGAAGCTACTTCACCATCCCTCGTGCTGAGCCAGTGAGACCCATTGACCCAGCAGCATGGATTTCACACACCACTGCTCTGACAGGACCTTACCCACACTATGAGTTTGATGACTTGCCTCTATCTGCAAGTAAAACAGACATGGCAACCATCGTCAAGGTGATGCAGTTGCCCGACTCTGGCCTGGAGATTCGAGACAGGATGTGGTTGAAGATCACCATCGCCAATGCTGTCATTGGTGCTGACGTGGTGGACTGGCTTTACTCCAGAGTTGAGGGATTCAAGGACCGGCGAGATGCGAGGAAGTACGCAAGCAGTCTGCTGAAACATGGCTACCTGAGACACACCGTCAACAAGATCACCTTCTCCGAGCAGTGCTACTATACCTTCGGGGACCTCTGCCAAAACATGGCATCACTCAATTTAAATGAGGGATCCAGCGGTGGAGGCTCTGAGCAGGACACTCTGGCACCGCTCCCTCCCACCAGCAACCCCTGGCCCCTGGGCGGGCAGCCATTCCCCTACCCTCCCTTTCCCTCTGCACCCCCCAGCTTCCCGCCAGGATACTCAGACCCGTGCCACAGTTTCCACAGTGGGAGCGCAGGCAGCCAGCACAGCGAGGGAAGCCGAAGCAGTGGATCCAACCCCAGCGCAGGCAAAGGTAGACTCCCCTCCCCACAGGagaagggtcaaaggtcaacatgCAGTGAGTCAGAGCCCCGCGTCCGTGGAGGGAGGCGTGGTGGGTCCGCCAGCCAAATGAGCCATCACAGCCACACCATCTCCAGTCACAGCCACGCTCGATCAAGTCACAGTCAGTTGCACAGGACTCACTCTCACTCAAAGAACAGCCACCTCTCCTTCACCTACAGCCACGCCCCCTTCACCCAGCCAGGGCCAGGGTCATGTGCCCACAGCGAGCGAAGCCATGCCTCCTCCTACGGCCCCCCAGGCTTGCCTCCCCCCTATTGTCTTGCCCATCTGGCCCCCAAGACCTCAGTGAGCAGCAGCACGCCCCCTGGAGCCCCTCCTGGGAGAGAGTTAGCAGCCGTTCCTCCTGAGCTCACTGCCAGCCGCCAGTCCTTCCAGCATGCTATGGGCAATCCCTGCGAGTTCTTTGTTGACATCATGTGACAGGTGACAGTGCCTTCAAAACTCATTGAGCACAAAACAATTCTCCCGCAAAGCCACTCAgccccttctctctttcctctcagtCGTTTGCCCCTGACCGTCTCCAAGTTCAGAATGTAGACACTGACTGGCCCTCTACCTAACCCCCTGCTATCTGTCTATCCATGTGATGTCCACGCAAAGGAATACAGGCAGCAAGAGCACAACCGGAGGGAggcttctcacacacacaagcacgggTCCTCTGTGGCGGAAAACCCTCTTTTGTATTGACGTGACGTGTACAGTTTGTGAAACGTGAGTGGTATTCAATGTGGTGATTCTTTAAAGCTGCCACGCAGACATTGTCGGGAGTGTGTACTCTACCTaggatattttcttttctgcaaGACCTTTAAGCTGGCTGGGCCTGGATCTCAATCCCCCAGACCCAGGCCTACACCTACAGCCCGCACTTAAGGACCGTTTCTCTGGGCCTAGGACTCGGAATTGATCTCCTGACTCATATCTGTGCATACAGATACAATTTAGCACGTATACACCAAACCTCTGGCCCCATTTCCTTCATACTGTGGCATTGCCACGGGCTTATTTAAGCTCTTACCTGCCTACTACTAAAAATGCTAACCTTGATCAGTTTATGATTCGTGGATTTCTTCAACTTCATAAAGGAGGCCCTGTAGCCAGCCATTAGTCTGACTAGGCTGCATATTGCATGACTGTCTCAACtgctttaaagaaaagaaattctattaatacattttgtttaaagTATTACCATTGGGGGGGAGGGCTTACTTCTTGCCAATGTTCTAAAGGAAGAATCCGTACACTGGATGGTTTTTGTGATGTTATTTATGTGATCATGTTGCATTGATGGTGTCATACTTTGTCTACTAAGGCTGACTGACAGACAATCAGACATCACCCTTTGTGAATCAGTGGCCAGTTTCCACTGTCCTAGCTGTGCTTTGTCGAATGTACCATTATTCCTGTCAGTGATTAAACCCTGAcattcacacaacacacaacaacactttggtttaaACAAATTTAAGTAAGCAGATCAACTTACAAACAGGATTGCAAACAGTGGGCACCTACCACAGCTGTGAAAGCAAACTCAAAGTGTTGAGAGGAGATACACCAGTCCTGGTTGTCTCCTTTGTAGCGAGTGTGAGCTTCGATGAAAGTCAGTGCGATAAAAGCCAAAGCCTCACATTGTGTGGTGGATATTTCTTTATGATGTAGGAGCTGTCTGTGACGTAAATCTCTTTATGATTCTCATCTGGCACCTCTTATTTTATGACTTCAAAGTGACTTCAGATTCAGATGGCCTTCAGATTCTGATCTCCTTGCAAAACAGTGGCAAACCCCTGTTGTATCTACCGAAAGTATAGTTACAAGAGGacaataacacacagacactagtTTTATGAGCacttttccatttccttttaGTATGAAACACTGTTTGCAATCAAAGCGTTCTCTTTAATTGTGTTTCTttacaaaagaagaaaagaagaataaaTTGTACATAgaaatttattatat

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007275 multicellular organism development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65844 lncRNA upstream 16291 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 20160 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 76937 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 128308 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 183047 12674342 ~ 12677678 (+) True G49301
TU65874 lncRNA downstream 34781 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 42032 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 420616 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 479507 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 479507 13365731 ~ 13378409 (+) True G49474
XM_039800616.1 mRNA upstream 1333 12848812 ~ 12859392 (+) True LOC120559133
XM_039799295.1 mRNA upstream 12750 12845618 ~ 12847975 (+) True aurkaip1
XM_039800808.1 mRNA upstream 17330 12823348 ~ 12843395 (+) False LOC120559236
XM_039799525.1 mRNA downstream 6247 12892471 ~ 12896719 (+) True tnfrsf9a
XM_039799527.1 mRNA downstream 25552 12911776 ~ 12920803 (+) True LOC120558505
XM_039799626.1 mRNA downstream 336769 13222993 ~ 13235009 (+) True dnajc11a
XM_039799627.1 mRNA downstream 337182 13223406 ~ 13235009 (+) False dnajc11a
XM_039799628.1 mRNA downstream 351246 13237470 ~ 13243293 (+) True LOC120558583
XR_005639089.1 other upstream 202417 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 402286 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 637087 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 650316 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 763888 12092779 ~ 12096837 (+) False LOC120559364
TU66161 other downstream 646166 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1226826 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1227044 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1227044 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1678643 14564867 ~ 14567456 (+) True G49773

Expression Profile